PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.26959s0397.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 253aa MW: 29651 Da PI: 8.4761 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.3 | 1.1e-14 | 10 | 56 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ien+ r++tf kR++g+lKK L +LCd++++ +++s + + + Bostr.26959s0397.1.p 10 IENEKSRKTTFNKRKKGLLKKLDKLVTLCDVKACAVVYSVEEVVSKF 56 9**************************************98766655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.128 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.8E-16 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.22E-17 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-11 | 2 | 22 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-15 | 10 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-11 | 22 | 37 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-11 | 37 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MRRKVKLSLI ENEKSRKTTF NKRKKGLLKK LDKLVTLCDV KACAVVYSVE EVVSKFMEFS 60 VREQTKKMVD QEAFIRQMID KEKVQLHKLR DENRKSRIRD CMFGCLKGEI DVCHLDQRDL 120 RDLSSFIDKY VNDLTRRIDI LTKNASPIRL NDQNQNQRKQ VQFQYKALFY FYDHIPQKIH 180 DFNMNMNMNS NQNMTLDLNQ NMTLDLNQNL NVGEHEDILS MDSNHQQPEI DCLATITNVD 240 ADVCAPNITN NV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 30 | RKTTFNKRKKGLLKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of gametophytes and seeds. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.26959s0397.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by MEA in seeds, and by PKL after germination. {ECO:0000269|PubMed:12815071, ECO:0000269|PubMed:16359393}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB830639 | 1e-94 | AB830639.1 Turritis glabra PHE1 gene for pheres1, partial cds, isolate: e007. | |||
GenBank | AB830640 | 1e-94 | AB830640.1 Turritis glabra PHE1 gene for pheres1, partial cds, isolate: e008. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020890945.1 | 1e-109 | MADS-box transcription factor PHERES 2 | ||||
Swissprot | Q7XJK8 | 1e-107 | PHE2_ARATH; MADS-box transcription factor PHERES 2 | ||||
TrEMBL | S6BIJ3 | 1e-120 | S6BIJ3_TURGL; Pheres1 (Fragment) | ||||
STRING | Bostr.26959s0397.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65300.1 | 7e-81 | AGAMOUS-like 38 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.26959s0397.1.p |
Publications ? help Back to Top | |||
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