PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26959s0323.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 631aa    MW: 71889.1 Da    PI: 6.8205
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26959s0323.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.81.5e-5561341129
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           +ppGfrFhPtdeelv +yLk+k++g+++el e+i+e+d+yk+ePwdLp k  + +++ ew+fFs+rd+ky++g+r+nratk+gyWkatg
  Bostr.26959s0323.1.p   6 MPPGFRFHPTDEELVIYYLKRKINGRTIEL-EIIPEIDLYKCEPWDLPgKsLLPSKDLEWFFFSPRDRKYPNGSRTNRATKAGYWKATG 93 
                           79****************************.99***************6434555777******************************* PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                           kd++v s ++++vg+kktLv+y+grap+g++tdWvmheyrle
  Bostr.26959s0323.1.p  94 KDRKVNS-HSRTVGTKKTLVYYRGRAPHGSRTDWVMHEYRLE 134
                           ******9.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-644156IPR003441NAC domain
PROSITE profilePS5100560.8996156IPR003441NAC domain
PfamPF023653.6E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MAPVSMPPGF RFHPTDEELV IYYLKRKING RTIELEIIPE IDLYKCEPWD LPGKSLLPSK  60
DLEWFFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS HSRTVGTKKT LVYYRGRAPH  120
GSRTDWVMHE YRLEEQECES KSGIQDAYAL CRVFKKSGLA NKIEEKQDHV MKNKATTNSE  180
QSTSSTCLYS DGIYENLENS EYPISPDTGG LTQLGNISSS DMETIENKWS QFMSHDMSFN  240
FPAQSQYGTI SYPPTKVEIE LECARLQNRM LPTAPPLYVE DLTHGEYLGN NVANDTDEML  300
SKIIALAQAS HEPRNSLDSW DGGSASGNFL GDFNYSGQKV ACVQANMKAV DMQEHYGRFK  360
EERLVENLRW VGVSSKDLEK SFIEEHSTVV PIEDIWSYHR YNQEHEHQDG MDVNNNNGDV  420
EDGFTLEFSE NEQKENLLDK SDHDTTSSPR FDVVKKVEVS HGLFVTTRQV TNTFFQQIVP  480
SQTVIVYINP TGADECYHKL TSKEKVHVCK KINSRINGVV STFLGPWRKF SYFFGFIPML  540
LLMCCVHQGG NSNKNRTSEG YLRQPKKGDC NNQGTILTME NAVVRRKICK KKKEKNMVDE  600
HGFWVQDSFM LKKLGLSLAI IIAVSTITLI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-56116212171NO APICAL MERISTEM PROTEIN
1ut4_B2e-56116212171NO APICAL MERISTEM PROTEIN
1ut7_A2e-56116212171NO APICAL MERISTEM PROTEIN
1ut7_B2e-56116212171NO APICAL MERISTEM PROTEIN
3swm_A2e-56116215174NAC domain-containing protein 19
3swm_B2e-56116215174NAC domain-containing protein 19
3swm_C2e-56116215174NAC domain-containing protein 19
3swm_D2e-56116215174NAC domain-containing protein 19
3swp_A2e-56116215174NAC domain-containing protein 19
3swp_B2e-56116215174NAC domain-containing protein 19
3swp_C2e-56116215174NAC domain-containing protein 19
3swp_D2e-56116215174NAC domain-containing protein 19
4dul_A2e-56116212171NAC domain-containing protein 19
4dul_B2e-56116212171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26959s0323.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF12P190.0AC009513.2 Sequence of BAC F12P19 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415135.10.0PREDICTED: NAC domain-containing protein 86-like isoform X1
TrEMBLR0HWP30.0R0HWP3_9BRAS; Uncharacterized protein
STRINGBostr.26959s0323.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101122632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.10.0NAC domain containing protein 28