PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26959s0105.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HSF
Protein Properties Length: 374aa    MW: 42184.4 Da    PI: 4.5515
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26959s0105.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.62e-33191112102
                           HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
          HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                           Fl+k ye+++d++++ +isws +  nsfv+ld++ f+ ++LpkyFkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F +g
  Bostr.26959s0105.1.p  19 FLRKCYEMVDDSSTDAIISWStSADNSFVILDTTVFSVQLLPKYFKHSNFSSFIRQLNIYGFRKVDADR---------WEFANDGFVRG 98 
                           9********************7778*****************************************999.........*********** PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  90 kkellekikrkks 102
                           +k+ll+++ r+k+
  Bostr.26959s0105.1.p  99 QKDLLKNVIRRKN 111
                           *******999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3413104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.3E-3214109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.7E-5415109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-191942IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-2819109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-195870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-197183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MVISAADGGG GSSSSVAPFL RKCYEMVDDS STDAIISWST SADNSFVILD TTVFSVQLLP  60
KYFKHSNFSS FIRQLNIYGF RKVDADRWEF ANDGFVRGQK DLLKNVIRRK NVQSNNQSKQ  120
ESKSTTDAPQ EKPEKSGLWK EVDILKGDKQ ALAQELIKVR QYQEITDTKM LHLKDRVQGM  180
EESQQEMLSF LVMVMKNPSL LVQLLQPKEK NSWRKAEGAT ILEEVTDEGE SNSSGLPLVT  240
YQPPSDNGTS KSSSNDLNDF LRNADIMKFC LDENHVPLII PDLYDDGAWE KLLLLSPSRK  300
KTNKQENNLK KGKDDATLEE EDGTMDLDKS LALELISEEM DKPDDFEFGQ LTPERYRNLE  360
ILTEQMGLLA SNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-24910919129Heat shock factor protein 1
5d5v_B2e-24910919129Heat shock factor protein 1
5d5v_D2e-24910919129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26959s0105.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2518660.0AJ251866.1 Arabidopsis thaliana mRNA for heat shock factor 5 (hsf5 gene).
GenBankAY0943960.0AY094396.1 Arabidopsis thaliana At1g67970/T23K23_18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302467.20.0LOW QUALITY PROTEIN: heat stress transcription factor A-8
SwissprotQ9S7U50.0HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLD7KW840.0D7KW84_ARALL; Predicted protein
STRINGBostr.26959s0105.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.10.0heat shock transcription factor A8