PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26959s0070.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 195aa MW: 22399.2 Da PI: 5.8905

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26959s0070.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.2	2.2e-06	85	127	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++E++RR+ +++ + L+ ++P + +K + a L +eYIksL Bostr.26959s0070.1.p 85 MMEKKRRQGFRDKVDILQGMIPYS-----TKSDLAGKLDNIIEYIKSL 127 79******************99.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.87E-6	75	130	No hit	No description
PROSITE profile	PS50888	10.677	78	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-10	81	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.2E-4	84	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-7	85	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MERNNGKEGT HEEELCSFCD MNYTVCYCSE DHNKLNPLHE IFGDHPSSRP EDVTKNNDHE 60 KLDEERDEES NRTAKRQRAI NDRLMMEKKR RQGFRDKVDI LQGMIPYSTK SDLAGKLDNI 120 IEYIKSLKHQ ADIMAMAYAA TPVYTSPYYG AQAPCMSAWG YYAPGIPIMP QQNMPYIPQY 180 DQVHGMAPRD QTKP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in somatic embryogenesis. Acts as positive regulator of somatic embryo formation (PubMed:23874927, PubMed:26973252). Acts as positive regulator of ECP63 by targeting its promoter and inducing its expression (PubMed:26973252). {ECO:0000269\|PubMed:23874927, ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26959s0070.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020889793.1	2e-89	transcription factor bHLH109
Swissprot	Q5XVH0	8e-88	BH109_ARATH; Transcription factor bHLH109
TrEMBL	D7KW98	5e-88	D7KW98_ARALL; Uncharacterized protein
STRING	Bostr.26959s0070.1.p	1e-146	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15032	14	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68240.1	3e-90	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.26959s0070.1.p

Publications ? help Back to Top
Gliwicka M,Nowak K,Balazadeh S,Mueller-Roeber B,Gaj MD Extensive modulation of the transcription factor transcriptome during somatic embryogenesis in Arabidopsis thaliana. PLoS ONE, 2013. 8(7): p. e69261 [PMID:23874927] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252]