PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26959s0039.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family CO-like
Protein Properties Length: 412aa    MW: 46504.3 Da    PI: 5.3039
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26959s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.84.5e-081457340
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                          +r C+ + + +++++C  ++ +lC+ C  + H+       H++v
  Bostr.26959s0039.1.p 14 ARACDSCVKRRARWYCAADDAFLCHACDGSVHSAnplarrHERV 57
                          578*****************************657888888876 PP
2CCT68.41.8e-23362405144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Bostr.26959s0039.1.p 362 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 405
                           9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6941259IPR000315B-box-type zinc finger
SMARTSM003365.0E-101259IPR000315B-box-type zinc finger
PfamPF006432.1E-61457IPR000315B-box-type zinc finger
CDDcd000212.98E-91559No hitNo description
PfamPF062035.3E-18362404IPR010402CCT domain
PROSITE profilePS5101716.083362404IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MMKSLASAVG GKTARACDSC VKRRARWYCA ADDAFLCHAC DGSVHSANPL ARRHERVRLK  60
SASTGKHRHA SSSSPPHQAT WHQGFTRKAR TPRGGKKSHT MGFHDLVPEI STEDQAESYE  120
VEGQLIFEVP VMNPMVEEQC FNESMETKME LPMMPICFKS SDDEDDDNAE SCLNGLFPTD  180
MELAQFTADV ETLLGGGIER DFHPTEELGL GEMLKIEKKE VEEEEGAAIK DVCDLDEVDE  240
ISPFEISFDY EYAHKMTYEE EEDEKEDVMK NVMDMGVNEM SGRIKEEKKE KALMLRLDYE  300
SVISTWGGQG IPWTAREPSE IDLDMVCCPT DSMGESGADQ AHHYNHFRGL GLHMGEAGDG  360
GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRSSIAAA H*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372388RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26959s0039.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0546250.0AY054625.1 Arabidopsis thaliana putative B-box zinc finger protein (At1g68520; T26J14.9) mRNA, complete cds.
GenBankAY0815410.0AY081541.1 Arabidopsis thaliana putative B-box zinc finger protein (At1g68520) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415472.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 6-like
SwissprotQ8LG760.0COL6_ARATH; Zinc finger protein CONSTANS-LIKE 6
TrEMBLR0GHM30.0R0GHM3_9BRAS; Uncharacterized protein
STRINGBostr.26959s0039.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]