PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0952.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 346aa    MW: 39002 Da    PI: 4.3515
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0952.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78e-20119169155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ++++GVr+++ +g+W+AeIrdp +   r+r++lg+f taeeAa  +++a+ +l+g
  Bostr.26833s0952.1.p 119 KKFRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFETAEEAAVVYDNAAIRLRG 169
                           59********.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.15E-34119176No hitNo description
Gene3DG3DSA:3.30.730.103.1E-30120177IPR001471AP2/ERF domain
SMARTSM003801.7E-39120183IPR001471AP2/ERF domain
PfamPF008474.2E-12120169IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21120178IPR016177DNA-binding domain
PROSITE profilePS5103223.775120177IPR001471AP2/ERF domain
PRINTSPR003672.5E-10121132IPR001471AP2/ERF domain
PRINTSPR003672.5E-10143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDEYIDFRPL KYTEHKTSVT KYTKKSPGKL SGDQSRPDSL RKVSICFTDP DATDSSSDED  60
EEDFLFPRRR VKRFVNEITV EPGCNNNTGV SMKERKRSQS PAATNRQRPL KVSISGQTKK  120
FRGVRQRPWG KWAAEIRDPE QRRRIWLGTF ETAEEAAVVY DNAAIRLRGP DALTNFSIPP  180
QEEEPEPVID TKPEINITTT TTTTSSSEST EDFQHLSSPT SVLNLRSEEM QQIQQPFKSA  240
KPEPEISDAP WWHTGFSTGS GETDDSFPLD TPFLDNYFNE SPPEMSIFDQ PMGQVFSEND  300
DIFNDMFLDG ESMNIGDELT SSGIKDIGSM FCDFDDSLIS DLLVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-22119178161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0952.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133880.0AB013388.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19E1.
GenBankAY5608780.0AY560878.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g53290) mRNA, complete cds.
GenBankBT0202440.0BT020244.1 Arabidopsis thaliana At5g53290 gene, complete cds.
GenBankBT0211360.0BT021136.1 Arabidopsis thaliana At5g53290 gene, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442886.10.0PREDICTED: ethylene-responsive transcription factor CRF3-like
SwissprotQ9FK121e-178CRF3_ARATH; Ethylene-responsive transcription factor CRF3
TrEMBLV4NBA30.0V4NBA3_EUTSA; Uncharacterized protein
STRINGBostr.26833s0952.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-178cytokinin response factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  3. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]