PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0909.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRF
Protein Properties Length: 361aa    MW: 40182.2 Da    PI: 8.7638
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0909.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC758.1e-24114157245
                   WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                            epgrCrRtDGKkWRC ++v++++k+CErHlhrgr rsrk++e+
  Bostr.26833s0909.1.p 114 LEPGRCRRTDGKKWRCAKEVVSNHKYCERHLHRGRPRSRKHVEP 157
                           69***************************************997 PP
2QLQ51.14.1e-186596233
                   QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33
                          +FT+aQl +L++Q+++yKy++a+ PvP +Ll+
  Bostr.26833s0909.1.p 65 PFTNAQLKELERQAMIYKYMIASIPVPFDLLV 96
                          9*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-1064100IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.6E-116595IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.18665100IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.438113157IPR014977WRC domain
PfamPF088793.9E-19115156IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDFLKVSDKT TIPCRSDSLF GLNQQQYKES SFGFKDMEIH PHPHGPHLIN PYAGNGVLGC  60
YYYYPFTNAQ LKELERQAMI YKYMIASIPV PFDLLVSSSS SASPCNNKNM VGDLEPGRCR  120
RTDGKKWRCA KEVVSNHKYC ERHLHRGRPR SRKHVEPPYS RPNNNGGSVR NRDLKNHPQK  180
LSSSFIKDKI LEPMEVSSAL KNYRESRGSD IFPVSATTDQ DTKYLNFIDV WSDGVRSSEK  240
QSTTSTPVSS SNGNLSLYSL DLSMGGNNLM GQDEMGLIQM GLGVIGSGRE DHHGYSPYCV  300
SSLEEMSSWL APMSTTPGGP LAEILRPSPN LATSGDIKSY SLTATQTPTR AARFRDYGVW  360
*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0909.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937910.0AB493791.1 Arabidopsis thaliana At5g53660 mRNA for hypothetical protein, partial cds, clone: RAAt5g53660.
GenBankAK1761090.0AK176109.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL22-89-N21.
GenBankBT0108820.0BT010882.1 Arabidopsis thaliana At5g53660 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280651.10.0growth-regulating factor 7
SwissprotQ9FJB80.0GRF7_ARATH; Growth-regulating factor 7
TrEMBLR0GAD30.0R0GAD3_9BRAS; Uncharacterized protein
STRINGBostr.26833s0909.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121062731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.10.0growth-regulating factor 7
Publications ? help Back to Top
  1. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]