PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26833s0878.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

HD-ZIP

Protein Properties

Length: 159aa MW: 18099.2 Da PI: 7.9696

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26833s0878.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.5e-19	11	66	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r k+ ++t+eq+++Le++F n+++ + + +L+++lgL++rqV vWFqN+Ra+ k Bostr.26833s0878.1.p 11 RNKKKRLTQEQVRQLENCFTVNKKLEPDLKIQLSNQLGLPQRQVAVWFQNKRARSK 66 567889************************************************99 PP
2	HD-ZIP_I/II	101.8	6.1e-33	12	104	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl++eqv++LE++F+ ++kLep+ K +l+++Lgl +rqvavWFqn+RAR kt+ lE ++ +L+++++a +++++Le++v+ L++ Bostr.26833s0878.1.p 12 NKKKRLTQEQVRQLENCFTVNKKLEPDLKIQLSNQLGLPQRQVAVWFQNKRARSKTQSLELQHCTLQSKLEAALSDKAKLEHQVQFLQD 100 59*************************************************************************************** PP HD-ZIP_I/II 90 elke 93 elk+ Bostr.26833s0878.1.p 101 ELKR 104 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.6E-18	4	62	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.02E-18	5	69	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.167	8	68	IPR001356	Homeobox domain
SMART	SM00389	1.6E-17	10	72	IPR001356	Homeobox domain
Pfam	PF00046	3.6E-16	11	66	IPR001356	Homeobox domain
CDD	cd00086	2.89E-15	11	69	No hit	No description
PROSITE pattern	PS00027	0	43	66	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
METSQSQSQS RNKKKRLTQE QVRQLENCFT VNKKLEPDLK IQLSNQLGLP QRQVAVWFQN 60 KRARSKTQSL ELQHCTLQSK LEAALSDKAK LEHQVQFLQD ELKRSRNQLA LFTNYDSPVD 120 NSNLGSCEEG HDDQVVVFDE LYACFVSNGH GSSSTSWV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26833s0878.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB007644	1e-175	AB007644.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K19P17.
GenBank	AK229211	1e-175	AK229211.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-49-M21.
GenBank	BT015927	1e-175	BT015927.1 Arabidopsis thaliana At5g53980 mRNA, complete cds.
GenBank	BT021920	1e-175	BT021920.1 Arabidopsis thaliana At5g53980 gene, complete cds.
GenBank	CP002688	1e-175	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020879304.1	1e-103	homeobox-leucine zipper protein ATHB-52
Swissprot	Q9FN29	1e-100	ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBL	D7MTN0	1e-102	D7MTN0_ARALL; ATHB52
STRING	Bostr.26833s0878.1.p	1e-113	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12107	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	1e-100	homeobox protein 52

Link Out ? help Back to Top
Phytozome	Bostr.26833s0878.1.p