PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26833s0688.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

M-type_MADS

Protein Properties

Length: 278aa MW: 31759.1 Da PI: 8.3569

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26833s0688.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.8	9e-16	10	51	2	43
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +i n+ r +t+ kR++ + KKA+E S+LC+++ ++i+++++ Bostr.26833s0688.1.p 10 KIMNEKTRITTYKKRKACLYKKASEFSTLCGVDTCLIVYGPS 51 68999***********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.4E-14	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.558	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.49E-19	2	96	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.34E-27	2	82	No hit	No description
PRINTS	PR00404	8.5E-7	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.3E-16	10	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.5E-7	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.5E-7	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MGRKMVKMAK IMNEKTRITT YKKRKACLYK KASEFSTLCG VDTCLIVYGP SRAGDEMVAE 60 PELWPKDESK VREIITKYRD TASSRCTKTY TMQECLEKNN TKVEKSKNAT KYHPWDKKLD 120 KCSLNELYAV FMAVENKIQE ATNRNQTFPD STSWSNDQLG LSGYNQQCLQ QYQLFPLPTM 180 EHNGYSFFPF NNQMTSNTTE VVSFSNATEP MIVNGPTFFS GSCSEGPYGP VVQRTAYMEP 240 IQWGLGNSMF NNVKQFPDYP FRFAQVNELE DSSKLPM*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26833s0688.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB009050	0.0	AB009050.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDF20.
GenBank	AY141214	0.0	AY141214.1 Arabidopsis thaliana MADS-box protein AGL47 mRNA, complete cds.
GenBank	BT026042	0.0	BT026042.1 Arabidopsis thaliana At5g55690 mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020879548.1	0.0	agamous-like MADS-box protein AGL82
Swissprot	Q9FIM0	4e-49	AGL82_ARATH; Agamous-like MADS-box protein AGL82
TrEMBL	R0GT53	0.0	R0GT53_9BRAS; Uncharacterized protein
STRING	Bostr.26833s0688.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5948	19	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	0.0	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Bostr.26833s0688.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]