PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0596.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 412aa    MW: 46278.7 Da    PI: 7.4142
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0596.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.71.9e-35431911128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........lelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkr 73 
                           lp+G++F+Ptd+elv e+L++kv+gk+        +           +i+   +i++++P++Lp  v+ +  + +fF+k +++y+tg+r
  Bostr.26833s0596.1.p  43 LPAGVKFDPTDQELV-EHLEAKVKGKDenekwsssH---PlidefipTIDGEdGICYTHPQKLP-GVTRDGLSNHFFHKPSRAYTTGTR 126
                           799************.99********9666655551...055554333555545**********.555666799*************** PP

                   NAM  74 knra.........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           k+r+          ++ +W++tgk+++v+  +g++ g+kk+Lv+y   g+++++ekt+Wvmh+y+l
  Bostr.26833s0596.1.p 127 KRRKiiqtdhdseLTETRWHKTGKTRPVVI-NGQQRGCKKILVLYtnFGKNRRPEKTNWVMHQYHL 191
                           ***778888887744799************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-3835210IPR003441NAC domain
PROSITE profilePS5100531.10143210IPR003441NAC domain
PfamPF023655.5E-1644191IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MKNSKCNLID SKLEEHHHLC GSKHCPGCGR MIQAATKPNW VGLPAGVKFD PTDQELVEHL  60
EAKVKGKDEN EKWSSSHPLI DEFIPTIDGE DGICYTHPQK LPGVTRDGLS NHFFHKPSRA  120
YTTGTRKRRK IIQTDHDSEL TETRWHKTGK TRPVVINGQQ RGCKKILVLY TNFGKNRRPE  180
KTNWVMHQYH LGINEEEREG ELVVSKIFYQ TQPRQCVSNI HWSDHHGSKD VIGIGVGDEI  240
SGVAAALQSL GSGDIVSRVR TNPYTRGFDE GTAETSKARE NQRVSGTCEE VHDGIIRPST  300
SSMSSHHMIH DHNQHHQIGD RREFHILSYP MTPTITSQHE SVFNVTSTMP FQQPLRGRSS  360
GSGLEDLIMG CTKATCTGDE HLEANPQQNA EWLTFPPFWN QAGSEGQNQK F*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0596.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133921e-175AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19.
GenBankCP0026881e-175CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010443312.10.0PREDICTED: NAC domain-containing protein 10-like isoform X2
RefseqXP_010451297.10.0PREDICTED: NAC domain-containing protein 10-like isoform X2
SwissprotQ9M0F81e-111NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1P8B9R10.0A0A1P8B9R1_ARATH; NAC domain containing protein 99
STRINGBostr.26833s0596.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149281720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56620.10.0NAC domain containing protein 99
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]