PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0584.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HRT-like
Protein Properties Length: 484aa    MW: 54718.4 Da    PI: 9.5413
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0584.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like56.16.3e-18277307131
              HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                           +CGvil++G +C+r+PvkgRKRC eHKG+R+
  Bostr.26833s0584.1.p 277 VCGVILDNGGFCNRSPVKGRKRCVEHKGQRV 307
                           7*****************************7 PP
2HRT-like51.81.4e-16337367131
              HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                           +CGvil d  +C++ Pv+gRKRCe HKGmRi
  Bostr.26833s0584.1.p 337 TCGVILPDMETCNKRPVPGRKRCEDHKGMRI 367
                           7*****************************7 PP
3HRT-like24.25.9e-08406432228
              HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKG 28 
                           C ++++ G +C+r+  kg KRC++HK 
  Bostr.26833s0584.1.p 406 CEATTKIGLPCTRSSPKGSKRCWQHKE 432
                           9999999*******************7 PP
4HRT-like54.61.8e-17453482231
              HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                           CGv+l +G +C+r+P+kgRKRCeeHKGmRi
  Bostr.26833s0584.1.p 453 CGVKLCNGLICERSPIKGRKRCEEHKGMRI 482
                           *****************************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MEFGDGVSFA VVPTVFKRED YKRTKHDVVF SKWQVLIGSN DWEDFKNGKD GVGRYRVQNL  60
PRKSCPGLYE LGVTVIVQDQ GRKLEPDDVL AAYLGQAENV RSRLQRYGRS GAHLRNAYNL  120
IDCETIESPV KKATGGLFED IFSKGGSILY RWAPMGSKRE AEATEGMLLS TFDYAWNKGS  180
NGERRQLDLL KKLGDREFMS KRKSGISRVL FPFLRNQVGI RIKGEKHVLK EERKLSCDVD  240
EGKSNNFLTS ILKLNRSRPQ LVSDRFDEID GSCTDSVCGV ILDNGGFCNR SPVKGRKRCV  300
EHKGQRVCRV SPKKQTPPQP EIFTGQDHYN HKDSDVTCGV ILPDMETCNK RPVPGRKRCE  360
DHKGMRINAF LFLLNQTDRE KTVKDDKSKP EQQTQINEEE HSTQFCEATT KIGLPCTRSS  420
PKGSKRCWQH KEKTSGDTSP VYFQPEAAKI VACGVKLCNG LICERSPIKG RKRCEEHKGM  480
RIT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269|PubMed:17991462, ECO:0000269|PubMed:22226340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0584.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133920.0AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_200489.20.0effector of transcription2
SwissprotF4K9330.0ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLA0A178URY30.0A0A178URY3_ARATH; ET2
STRINGBostr.26833s0584.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.10.0effector of transcription2