PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0569.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 694aa    MW: 76068.2 Da    PI: 6.5138
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0569.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.9e-06427447525
                           --SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                           +C++f   G+C++Gd+C F+H
  Bostr.26833s0569.1.p 427 PCNNFITKGFCHRGDSCLFSH 447
                           7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.83E-6368393IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99368395IPR000571Zinc finger, CCCH-type
SMARTSM003560.085369394IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.934397424IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025397423IPR000571Zinc finger, CCCH-type
SMARTSM003562.7425449IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6426451IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.789427450IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MKSSVAPFPH QRTHLPNRTY RSFLHHLCSS FDREPRVSLA TPAVLQELVL RTEIAQVSPG  60
EAWKPPAELP MVESRSNGVS GDSRGEKVET ILQEKGLMLG DVFDGIDLQD ASVGSGHKDF  120
FDDFELMINE SQDFVPESCV NLFEALDVNN YDGDVMVASL DDIAKQPLDI VQNVVEKPNI  180
ATEVQLDPVE SDKKAEEVPK SVESNEVISS GVLEACNETV QREMELEKTV DSTQVLVDFV  240
PRIVEDDDVE EGEISGDDML VGDDEPVERH EESHVSQEGI GNCHLTSHES FGKKLGVEVS  300
NVDNRAKKSN QTFSNEAKMD PGTSIKKRSV LSKEAKARKR AKSRKKRAQE RIALGVKKLK  360
LKPVAPKPKP IKYCRHYVKG RCYEGDKCKF SHDTTPETKS SPCCYFATQS CMKGDDCPYD  420
HDLSKYPCNN FITKGFCHRG DSCLFSHKGT PQSASDTSSA NVTASSTNIA AASFSPQKTN  480
KQSVRDAIAK LPAIQARVSS AVAFLKPLGQ SNQRNSSDAS SPKINEHVTP PHVPPLRKPS  540
VAPKGMSFLS LDKTFQEDTV KLSPASKPNT DNSDNQTLKQ SQQGSFLPVV PPKGTSFLSF  600
ASEEQKTLNR EPQEPASSRN LKTTPNSHIQ SSLNSAMKLA AEFESAKVER CSNDPVEAVN  660
KGDIKVNTTV TRNSGNISSK ILEFLSSFSH GKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325346KKRSVLSKEAKARKRAKSRKKR
2337359RKRAKSRKKRAQERIALGVKKLK
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0569.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240350.0AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280089.20.0zinc finger CCCH domain-containing protein 65
SwissprotQ9LTS70.0C3H65_ARATH; Zinc finger CCCH domain-containing protein 65
TrEMBLR0EV460.0R0EV46_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.26833s0569.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121601516