PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0543.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 248aa    MW: 27955.4 Da    PI: 4.3631
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0543.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.7e-1457100755
                           HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             Er+RR+++N++++ Lr+++P+      +K++Ka+i + A+ YI+ Lq
  Bostr.26833s0543.1.p  57 VSERNRRQKLNQRLFALRSVVPNI-----TKMDKASIIKDAISYIQGLQ 100
                           57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1775099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.11E-1353100No hitNo description
SuperFamilySSF474593.53E-1753116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-1756115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-1456105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-1157100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MENTMDQEFS NYWEPNSFLQ NEEFEYDSWP LEEAISGSYD SSSPDGAASS PASKNIVSER  60
NRRQKLNQRL FALRSVVPNI TKMDKASIIK DAISYIQGLQ YEEGKLEAEI RELESTPKSS  120
LSFSKDFDRD LLVPVTSKKM KQLDSGSSSS LIEVLELKVT FMGERTMVVS ITCNKRTDTM  180
VKLCEVFESL NLKILTSNLT SFSGMIFHTV FIEADEEEQE VLRLKIETGI GAYNETQSPT  240
LSIDSLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-1455109963Transcription factor MYC2
5gnj_B6e-1455109963Transcription factor MYC2
5gnj_E6e-1455109963Transcription factor MYC2
5gnj_F6e-1455109963Transcription factor MYC2
5gnj_G6e-1455109963Transcription factor MYC2
5gnj_I6e-1455109963Transcription factor MYC2
5gnj_M6e-1455109963Transcription factor MYC2
5gnj_N6e-1455109963Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0543.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0866660.0AY086666.1 Arabidopsis thaliana clone 266884 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019092473.11e-178PREDICTED: transcription factor bHLH35 isoform X1
SwissprotQ2HIV91e-173BH035_ARATH; Transcription factor bHLH35
TrEMBLD7MMS11e-174D7MMS1_ARALL; Basic helix-loop-helix family protein
STRINGBostr.26833s0543.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-161bHLH family protein