PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.26833s0489.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | CO-like | ||||||||
Protein Properties | Length: 362aa MW: 39786.5 Da PI: 6.4997 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.2 | 3.4e-08 | 19 | 57 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39 +r C+ +++ + fC+ ++ +lC +C +++H+ H++ Bostr.26833s0489.1.p 19 ARSCDACKSVTADVFCRVDSAFLCITCDTKIHSFtrHER 57 578******99*********************6577876 PP | |||||||
2 | zf-B_box | 28.1 | 4.3e-09 | 58 | 103 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C + +H+ H++vp+ Bostr.26833s0489.1.p 58 VWVCEVCEQAPAAVTCKADAAALCVTCDSDIHSAnplasrHERVPV 103 689*****************************66999999999986 PP | |||||||
3 | CCT | 70 | 6.2e-24 | 293 | 336 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++ Bostr.26833s0489.1.p 293 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 336 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.182 | 17 | 60 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.2E-6 | 17 | 60 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 9.5E-7 | 20 | 58 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.25E-8 | 20 | 60 | No hit | No description |
PROSITE profile | PS50119 | 10.722 | 56 | 103 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.5E-7 | 57 | 103 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.05E-8 | 59 | 103 | No hit | No description |
SMART | SM00336 | 4.6E-10 | 61 | 103 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.817 | 293 | 335 | IPR010402 | CCT domain |
Pfam | PF06203 | 5.6E-18 | 293 | 335 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MGFGLESIKS ISGEWGVAAR SCDACKSVTA DVFCRVDSAF LCITCDTKIH SFTRHERVWV 60 CEVCEQAPAA VTCKADAAAL CVTCDSDIHS ANPLASRHER VPVESFFGSA VAKISASSTF 120 GILGSSTTVD LTAVPVMSDD LGLCPWLLPN NFNEPAKIEI GTENMKSSDF MFSDFDRLID 180 FEFQNSLNHH QPSHTNNAGA DSLVPVQTKT EPIPLTNNDH CFDIDFCRSK LSAFTYPTQS 240 VSHSISTSSL EYGVVPDRNT NNSVSEISIP FNRSAITSST AATTSDQTSS MDREARVLRY 300 REKRKNRKFE KTIRYASRKA YAESRPRIKG RFAKRTETEN DDIFLSHVYA SAAQYGVVPT 360 F* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.26833s0489.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY088432 | 0.0 | AY088432.1 Arabidopsis thaliana clone 6639 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006280689.1 | 0.0 | zinc finger protein CONSTANS-LIKE 5 | ||||
Swissprot | Q9FHH8 | 0.0 | COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | R0EWL4 | 0.0 | R0EWL4_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.26833s0489.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7899 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 0.0 | CONSTANS-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.26833s0489.1.p |
Publications ? help Back to Top | |||
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