PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0299.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 608aa    MW: 69029.7 Da    PI: 6.0259
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0299.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS399.82.8e-1222225952374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsP 89 
                           + lL++cA+av+s d+++a + L++++ ++s+dgd +qRla+yf+ AL+ar+++  ++ ++  +p+s+ts   +++ l+a+klf++++P
  Bostr.26833s0299.1.p 222 RGLLTQCAQAVASFDQRRAAEKLKEIRSHSSSDGDGTQRLAFYFADALEARITGnISPPVSTPFPSSTTS---MVDILKAYKLFVHTCP 307
                           679***************************************************6666777666777776...**************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           i+   +++aN+ I+e + +++++Hi+Df++ +G+QWp+Ll aL++R +gpp+lR+Tg++ p+sg   ++++eetg+rL++f+++++vpf
  Bostr.26833s0299.1.p 308 IYVTDYFAANKSIYELALKATTLHIVDFGVLYGFQWPCLLLALSKRLGGPPMLRVTGIELPQSGfrPSDRVEETGRRLKRFCDKFNVPF 396
                           ***************************************************************9************************* PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           efn+ +ak++e+++l+e++++pgE+++Vn++++l++++de+vsl+s+rd+vLkl+++++P+++v++e +  +ns+ F++rf eal ++s
  Bostr.26833s0299.1.p 397 EFNF-IAKKWESISLDEIKINPGETTVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHFS 484
                           ****.7*********************************************************************************** PP

                  GRAS 266 alfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                           +lfd++++++ +e+  ++r+ +E+ell r++++v++cegaer++r et+++Wr r+ +aGFkp+++s++++k+ak ++rk + + + ++
  Bostr.26833s0299.1.p 485 SLFDMFDTTIQAEDeyKNRALLEKELLVRDAMSVISCEGAERFARPETYKQWRVRILRAGFKPATISKQIMKDAKEIVRKRYHRDFVID 573
                           *********99998899*****************************************************************999**** PP

                  GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                           ++++++++gWk+r ++++S+W+
  Bostr.26833s0299.1.p 574 SDNNWMLQGWKGRVIYAFSCWK 595
                           *********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.944195575IPR005202Transcription factor GRAS
PfamPF035149.7E-120222595IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MDALLQVSVD GFRFENGSGS CCKPRNNLES GNNLFPNFHE AQNQSSPNDS PPSVCLDNSP  60
VLKYINDMLM DEEDFVGESR DNLALQAAER SFYELLQQQS PESDQNTSSS DQNSGDPCFS  120
SISTTTSLTD SAANGESQRK HRHRNDEEDD LETYRRNKLP AIFVSEMEEL AVKFEHVLLV  180
CKANQEEEES AITKQSQPNR AGRAKGSSNR SKMQNSNSVD LRGLLTQCAQ AVASFDQRRA  240
AEKLKEIRSH SSSDGDGTQR LAFYFADALE ARITGNISPP VSTPFPSSTT SMVDILKAYK  300
LFVHTCPIYV TDYFAANKSI YELALKATTL HIVDFGVLYG FQWPCLLLAL SKRLGGPPML  360
RVTGIELPQS GFRPSDRVEE TGRRLKRFCD KFNVPFEFNF IAKKWESISL DEIKINPGET  420
TVVNCIHRLQ YTPDETVSLD SPRDTVLKLF RDINPDLFVF AEINGMYNSP FFMTRFREAL  480
FHFSSLFDMF DTTIQAEDEY KNRALLEKEL LVRDAMSVIS CEGAERFARP ETYKQWRVRI  540
LRAGFKPATI SKQIMKDAKE IVRKRYHRDF VIDSDNNWML QGWKGRVIYA FSCWKPAEKL  600
TNNHVNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-4322759625380Protein SCARECROW
5b3h_A2e-4322759624379Protein SCARECROW
5b3h_D2e-4322759624379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0299.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256040.0AB025604.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F2O15.
GenBankAY0350010.0AY035001.1 Arabidopsis thaliana putative scarecrow 11 protein (At5g59450) mRNA, complete cds.
GenBankAY0629420.0AY062942.1 Arabidopsis thaliana putative scarecrow 11 protein (At5g59450) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_200753.10.0GRAS family transcription factor
SwissprotQ9LTI50.0SCL11_ARATH; Scarecrow-like protein 11
TrEMBLA0A178UGG60.0A0A178UGG6_ARATH; Uncharacterized protein
STRINGBostr.26833s0299.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]