PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0280.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family G2-like
Protein Properties Length: 290aa    MW: 31577.6 Da    PI: 6.7322
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.71.5e-29130183155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           +prl+Wt++LH+rFv++v++L G++ A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Bostr.26833s0280.1.p 130 RPRLVWTQQLHKRFVDVVAHL-GIKSAVPKTIMQLMNVEGLTRENVASHLQKYRL 183
                           59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.056125186IPR017930Myb domain
SuperFamilySSF466893.23E-19127187IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-30129188IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-24131183IPR006447Myb domain, plants
PfamPF002499.8E-8133182IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGKEIRMSDY GDDEQDRVLE WEIGLPSGDD LTPLSQSLVP SILALAFSII PERSRTTHDV  60
NRALQITISS LRSSANVSSV EEVVARVGSS SPGSDPKKQK KSDGGEAAVD SMAEEGDSGT  120
EDASGKTLKR PRLVWTQQLH KRFVDVVAHL GIKSAVPKTI MQLMNVEGLT RENVASHLQK  180
YRLYLKRIQG LMTEEGPYSS DQLFSSTPVP PQSFQDGGGS NIVTGKLGIS VLVPSMIPMP  240
VYGNHMGMQG HYHQYRKHGN ESNQYMMQQN KFGTMVTSPS LGGSDVNDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-33130186157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is a critical component of the regulatory circuit of the circadian clock. Binds to specific sites on CCA1 promoter leading to CCA1 activation. Is required for the rhythmic expression of other clock genes such as LHY, GI and APRR1/TOC1. {ECO:0000269|PubMed:21447790}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0280.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256040.0AB025604.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F2O15.
GenBankAB2065770.0AB206577.1 Arabidopsis thaliana PCLL gene for putative transcription factor, complete cds.
GenBankAK1173480.0AK117348.1 Arabidopsis thaliana At5g59570 mRNA for ARR1 like protein, complete cds, clone: RAFL16-91-G07.
GenBankAY0880890.0AY088089.1 Arabidopsis thaliana clone 41153 mRNA, complete sequence.
GenBankBT0260650.0BT026065.1 Arabidopsis thaliana At5g59570 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280902.11e-177transcription factor BOA
SwissprotQ9LTH41e-158PCLL_ARATH; Transcription factor BOA
TrEMBLR0GN751e-176R0GN75_9BRAS; Uncharacterized protein
STRINGBostr.26833s0280.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40552758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.11e-146G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]