PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26833s0275.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

NAC

Protein Properties

Length: 353aa MW: 40531.2 Da PI: 5.8701

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26833s0275.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	68.1	2.4e-21	11	164	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkya....tgkrknra....... 77 ++f+F+Pt++e++++yL +k +g+ + +i e d+y ePw L++ ++ +e++wy+F++r + ++ gkr++++ Bostr.26833s0275.1.p 11 VCFHFDPTEQEVIKNYLVRKQRGEACGD--FIVEKDVYAKEPWLLDH-TNDpffKEDQWYYFVRRTQISEqkigCGKRAKQQitgdnnd 96 579******************99655..89*********84.222355889***9887663333455666645677766 PP NAM 78 .tksgyWkatgkdkevlskkgelvglkktLvfy................kgrapkgektdWvmheyrl 128 +++gyW+a gk++ + +++ge +g+ ++L+f + g++++W+m+e+ l Bostr.26833s0275.1.p 97 gIDHGYWRANGKKNIIDEETGEIIGVNQSLTFNmsnndnnkkkhkrgdgASATVPGSESSWIMNEFVL 164 677*****9999999**********88877765554433222344456799****976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	27.482	9	183	IPR003441	NAC domain
SuperFamily	SSF101941	3.4E-26	11	183	IPR003441	NAC domain
Pfam	PF02365	1.8E-14	12	164	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MSNGYNSEEE VCFHFDPTEQ EVIKNYLVRK QRGEACGDFI VEKDVYAKEP WLLDHTNDPF 60 FKEDQWYYFV RRTQISEQKI GCGKRAKQQI TGDNNDGIDH GYWRANGKKN IIDEETGEII 120 GVNQSLTFNM SNNDNNKKKH KRGDGASATV PGSESSWIMN EFVLPSDKKN TFQKLVLCKI 180 TKKKNPKKKD DDHHEVSTST CHHHHESFYS EQQSVNEAHH QNPEIPRIGS MSLTCSISEK 240 ERNIEQCVEG SMIHQVDAFS LEKKNEKAEA MEGQKHVLGN FPTKRIVERV LMDTKDQQTP 300 VLCPARLNAP HVRLGDKSLP IELDNDNEED EEEWKKDVYA FLKFIGEDAP NM*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MSNGYNSEEE VCFHFDPTEQ EVIKNYLVRK QRGEACGDFI VEKDVYAKEP WLLDHTNDPF  60
FKEDQWYYFV RRTQISEQKI GCGKRAKQQI TGDNNDGIDH GYWRANGKKN IIDEETGEII  120
GVNQSLTFNM SNNDNNKKKH KRGDGASATV PGSESSWIMN EFVLPSDKKN TFQKLVLCKI  180
TKKKNPKKKD DDHHEVSTST CHHHHESFYS EQQSVNEAHH QNPEIPRIGS MSLTCSISEK  240
ERNIEQCVEG SMIHQVDAFS LEKKNEKAEA MEGQKHVLGN FPTKRIVERV LMDTKDQQTP  300
VLCPARLNAP HVRLGDKSLP IELDNDNEED EEEWKKDVYA FLKFIGEDAP NM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-15	13	189	21	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-15	13	189	21	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-15	13	189	21	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-15	13	189	21	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-15	13	189	24	174	NAC domain-containing protein 19
3swm_B	2e-15	13	189	24	174	NAC domain-containing protein 19
3swm_C	2e-15	13	189	24	174	NAC domain-containing protein 19
3swm_D	2e-15	13	189	24	174	NAC domain-containing protein 19
3swp_A	2e-15	13	189	24	174	NAC domain-containing protein 19
3swp_B	2e-15	13	189	24	174	NAC domain-containing protein 19
3swp_C	2e-15	13	189	24	174	NAC domain-containing protein 19
3swp_D	2e-15	13	189	24	174	NAC domain-containing protein 19
4dul_A	2e-15	13	189	21	171	NAC domain-containing protein 19
4dul_B	2e-15	13	189	21	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26833s0275.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002880870.1	1e-80	NAC domain-containing protein 55
TrEMBL	D7LFH9	3e-79	D7LFH9_ARALL; Uncharacterized protein
STRING	Bostr.26833s0275.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2607	13	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	9e-18	NAC domain containing protein 35

Link Out ? help Back to Top
Phytozome	Bostr.26833s0275.1.p