PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.26833s0275.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 353aa MW: 40531.2 Da PI: 5.8701 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 68.1 | 2.4e-21 | 11 | 164 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkya....tgkrknra....... 77 ++f+F+Pt++e++++yL +k +g+ + +i e d+y ePw L++ ++ +e++wy+F++r + ++ gkr++++ Bostr.26833s0275.1.p 11 VCFHFDPTEQEVIKNYLVRKQRGEACGD--FIVEKDVYAKEPWLLDH-TNDpffKEDQWYYFVRRTQISEqkigCGKRAKQQitgdnnd 96 579********************99655..89*************84.222355889*******9887663333455666645677766 PP NAM 78 .tksgyWkatgkdkevlskkgelvglkktLvfy................kgrapkgektdWvmheyrl 128 +++gyW+a gk++ + +++ge +g+ ++L+f + g++++W+m+e+ l Bostr.26833s0275.1.p 97 gIDHGYWRANGKKNIIDEETGEIIGVNQSLTFNmsnndnnkkkhkrgdgASATVPGSESSWIMNEFVL 164 677*********9999999**************88877765554433222344456799******976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.482 | 9 | 183 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.4E-26 | 11 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-14 | 12 | 164 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 353 aa Download sequence Send to blast |
MSNGYNSEEE VCFHFDPTEQ EVIKNYLVRK QRGEACGDFI VEKDVYAKEP WLLDHTNDPF 60 FKEDQWYYFV RRTQISEQKI GCGKRAKQQI TGDNNDGIDH GYWRANGKKN IIDEETGEII 120 GVNQSLTFNM SNNDNNKKKH KRGDGASATV PGSESSWIMN EFVLPSDKKN TFQKLVLCKI 180 TKKKNPKKKD DDHHEVSTST CHHHHESFYS EQQSVNEAHH QNPEIPRIGS MSLTCSISEK 240 ERNIEQCVEG SMIHQVDAFS LEKKNEKAEA MEGQKHVLGN FPTKRIVERV LMDTKDQQTP 300 VLCPARLNAP HVRLGDKSLP IELDNDNEED EEEWKKDVYA FLKFIGEDAP NM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-15 | 13 | 189 | 21 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-15 | 13 | 189 | 21 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-15 | 13 | 189 | 21 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-15 | 13 | 189 | 21 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-15 | 13 | 189 | 24 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-15 | 13 | 189 | 24 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-15 | 13 | 189 | 24 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-15 | 13 | 189 | 24 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-15 | 13 | 189 | 24 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-15 | 13 | 189 | 24 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-15 | 13 | 189 | 24 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-15 | 13 | 189 | 24 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-15 | 13 | 189 | 21 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-15 | 13 | 189 | 21 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.26833s0275.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002880870.1 | 1e-80 | NAC domain-containing protein 55 | ||||
TrEMBL | D7LFH9 | 3e-79 | D7LFH9_ARALL; Uncharacterized protein | ||||
STRING | Bostr.26833s0275.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2607 | 13 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02450.1 | 9e-18 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.26833s0275.1.p |