PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26833s0242.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

HSF

Protein Properties

Length: 123aa MW: 14302.6 Da PI: 10.4516

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26833s0242.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	23.2	1.8e-07	8	48	14	53
GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT.--HHHH CS HSF_DNA-bind 14 elkeliswsengnsfvvldeeefakkvLpkyFkh.snfaSF 53 l+ +isws+++nsf++++ ef +++Lpk + +nf+S+ Bostr.26833s0242.1.p 8 ILDPIISWSKSNNSFIIWNLGEFCRDILPKSVEFgRNFSSL 48 46889***********************9976531577775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.5E-7	9	81	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	9.1E-6	9	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.54E-6	9	73	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MMSERNAILD PIISWSKSNN SFIIWNLGEF CRDILPKSVE FGRNFSSLYF YLRGLLIKRT 60 NSIIERTPTQ WSFVRDLLVK KDRNWQLISG SIDAENKIKY GKSSAYVFRV INSALTLRNY 120 LI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26833s0242.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Bostr.26833s0242.1.p	4e-83	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3839	14	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77570.1	1e-14	Winged helix-turn-helix transcription repressor DNA-binding

Link Out ? help Back to Top
Phytozome	Bostr.26833s0242.1.p