PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.26833s0215.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | Dof | ||||||||
Protein Properties | Length: 264aa MW: 28659.8 Da PI: 8.9659 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.1 | 1.1e-39 | 55 | 113 | 4 | 62 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 al+cprCdstntkfCyynnysl+qPryfCk+CrryWtkGG+lrn+PvGgg+rknk+s+ Bostr.26833s0215.1.p 55 LALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRST 113 5789****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-28 | 54 | 110 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-33 | 57 | 111 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.45 | 57 | 111 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 59 | 95 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MDHLLQHQDV FGNYNKAREA MGVSYSSNPT QVDQDQKKRS QATPAAATRP QPPELALRCP 60 RCDSTNTKFC YYNNYSLTQP RYFCKSCRRY WTKGGTLRNI PVGGGCRKNK RSTSSATRSL 120 RTTPEPASHD GKAFSAASFG GYNNNEQIDL SLAFALLNKQ PSGSSAQLGF PSEFGSSHQS 180 DMEGVFGTNQ PKGNASYAFG NGSSGLDIGM GDPSRVLWGF PWQMNGESFG MMNIGAGGGH 240 VDQIDSGREI WTNMNYINSG ALM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:30626969}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.26833s0215.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinin in procambium (PubMed:30626969). Induced by the transcription factor MONOPTEROS (MP) in cells relevant for root initiation, and later in vascular tissues and hypophysis (PubMed:20220754). {ECO:0000269|PubMed:20220754, ECO:0000269|PubMed:30626969}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY086054 | 0.0 | AY086054.1 Arabidopsis thaliana clone 20852 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010456134.1 | 1e-179 | PREDICTED: dof zinc finger protein DOF5.3-like isoform X1 | ||||
Refseq | XP_010456143.1 | 1e-179 | PREDICTED: dof zinc finger protein DOF5.3-like isoform X2 | ||||
Swissprot | Q84TE9 | 1e-167 | DOF53_ARATH; Dof zinc finger protein DOF5.3 | ||||
TrEMBL | R0EWQ2 | 1e-175 | R0EWQ2_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.26833s0215.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6132 | 18 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 1e-151 | TARGET OF MONOPTEROS 6 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.26833s0215.1.p |
Publications ? help Back to Top | |||
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