PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.26833s0140.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 362aa MW: 40223.9 Da PI: 6.8655 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 96 | 7.4e-30 | 62 | 150 | 3 | 66 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................s 66 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak +++l+ + s Bostr.26833s0140.1.p 62 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKDDVDKLPPLqfphgfnqmypnlifgnsgfgespsS 150 78*************************************************************55555554444444444444322220 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-27 | 63 | 181 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.789 | 63 | 121 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 362 aa Download sequence Send to blast |
MRSRECDEEE IQAKQEGDHN QNHQVNLNHM LQQQQPSSVS SSRQWTSAFR NPRIVRVSRT 60 FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL SQPSKVIDWL LEAAKDDVDK 120 LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TSSTTFPGTN LGLLENWDLG GSSRTRSRIT 180 DTTTTQRESF DLDKGKWIKH DENSNQDHQG FDTSHQHFPL TNPYNNTSSY YNLGPLQQSL 240 DQSGNNVTVA ISNVAANNNN NLNLPPPSSS AGDGSQLFFG PTPPAMSSLF PTYPSFLGAS 300 HHHHHHVVDG AGHLQLFSSN SNTASQQQMI TGNTTLIRPF HHLMSSNHDT DRHSSDNDSD 360 S* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-19 | 68 | 122 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-19 | 68 | 122 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.26833s0140.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB008269 | 0.0 | AB008269.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSL3. | |||
GenBank | BT029489 | 0.0 | BT029489.1 Arabidopsis thaliana At5g60970 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006280693.1 | 0.0 | transcription factor TCP5 | ||||
Refseq | XP_020878514.1 | 0.0 | transcription factor TCP5 | ||||
Swissprot | Q9FME3 | 0.0 | TCP5_ARATH; Transcription factor TCP5 | ||||
TrEMBL | R0EXI8 | 0.0 | R0EXI8_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.26833s0140.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3576 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60970.1 | 1e-171 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.26833s0140.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|