PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.26833s0072.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MYB_related | ||||||||
Protein Properties | Length: 325aa MW: 35676.4 Da PI: 9.8154 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.9 | 2.4e-13 | 107 | 152 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+ ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky Bostr.26833s0072.1.p 107 KPWTEEEHRNFLIGLNKLGKGDWRGIAKSFVTTRTPTQVASHAQKY 152 58*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.614 | 11 | 24 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 18.47 | 101 | 157 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.48E-17 | 103 | 157 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-16 | 104 | 155 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.2E-10 | 105 | 155 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-11 | 105 | 151 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-11 | 107 | 152 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.93E-9 | 108 | 153 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MLKETVTAKT CSHCGHNGHN ARTCLNGVNK GSVKLFGVNI SSNPIMPPEV TALRKSLSLG 60 NLDALLANDD SNGNGDPIAA VEDTGYHSDG QIHSKKGKTA HEKKKGKPWT EEEHRNFLIG 120 LNKLGKGDWR GIAKSFVTTR TPTQVASHAQ KYFIRLNVND KRKRRASLFD ISLEDQGFKF 180 GLIEHKEKER NSQDASTSKT PSKKPVTGSQ QPVVQGQTQT EISNRFQNLS MEYMPVYQTV 240 PPYYNFPSLM FHPMYYANPE TIRFVHPSGI PVPRHVPMGM PQSQPNEASD MTTKDGLELG 300 IGLPPPPQAT GATDLTGHGV IHVK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00573 | DAP | Transfer from AT5G61620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.26833s0072.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB012239 | 1e-110 | AB012239.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K11J9. | |||
GenBank | CP002688 | 1e-110 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002864744.1 | 0.0 | probable transcription factor At5g61620 | ||||
Swissprot | Q9FKF9 | 0.0 | M5162_ARATH; Probable transcription factor At5g61620 | ||||
TrEMBL | D7MV43 | 0.0 | D7MV43_ARALL; Myb family transcription factor | ||||
STRING | Bostr.26833s0072.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6021 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61620.1 | 1e-172 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.26833s0072.1.p |
Publications ? help Back to Top | |||
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