PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.26675s0264.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | CO-like | ||||||||
Protein Properties | Length: 324aa MW: 37716.1 Da PI: 5.9836 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 27.5 | 6.5e-09 | 17 | 58 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 ++r C+++ +k++ ++C +++ +lC+ C ++ H+ H Bostr.26675s0264.1.p 17 QPRACDLCLNKHAVWYCASDDAFLCHVCDESVHSAnhvatkH 58 7899*****************************657555555 PP | |||||||
2 | CCT | 67.1 | 5e-23 | 275 | 318 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++ +Y++Krk+R+FeKkirYe+RK++A++RpR+KGrFv+++ Bostr.26675s0264.1.p 275 REAKVWKYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRRS 318 9****************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.5E-11 | 16 | 63 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.139 | 16 | 63 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.5E-7 | 17 | 60 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.80E-11 | 19 | 63 | No hit | No description |
Pfam | PF06203 | 1.7E-17 | 275 | 317 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.696 | 275 | 317 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MFCSEIMIRK YQEDVKQPRA CDLCLNKHAV WYCASDDAFL CHVCDESVHS ANHVATKHER 60 VFLRTNDVLQ GTTSNPVWHS GFRRKARTSR SRYEKKPPQK IDDERRREDP RVPEIGGEAM 120 FSIPEANDDD DMTSLVPEFE GFTEMGFFLS NHNGTEETTK QFNFEDEIDA MEDLYYNEEE 180 EAAKNNGAET CPGQSLMSCK KDYDNVIAIS AKTEESEDYE INAKQRNMLL RLNYESVIAA 240 WDKQESPREA ADNTSNFQLV PPGIEEKKMC NRSEREAKVW KYRDKRKNRL FEKKIRYEVR 300 KVNADKRPRM KGRFVRRSLA TDS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.26675s0264.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK317381 | 0.0 | AK317381.1 Arabidopsis thaliana AT1G49130 mRNA, complete cds, clone: RAFL25-23-K13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019091540.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 8-like isoform X1 | ||||
Swissprot | Q9M9B3 | 0.0 | COL8_ARATH; Zinc finger protein CONSTANS-LIKE 8 | ||||
TrEMBL | A0A178WMU3 | 0.0 | A0A178WMU3_ARATH; BBX17 | ||||
STRING | Bostr.26675s0264.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15048 | 15 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49130.2 | 1e-179 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Bostr.26675s0264.1.p |