PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26675s0216.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

G2-like

Protein Properties

Length: 339aa MW: 37964 Da PI: 7.1212

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26675s0216.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	4e-32	197	252	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++WtpeLH+rFv+a++qLGG+ +AtPk+i+e+m+ +gLt+++vkSHLQkYRl+ Bostr.26675s0216.1.p 197 KQRRCWTPELHRRFVDALQQLGGPGVATPKQIREHMQEEGLTNDEVKSHLQKYRLH 252 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.995	194	254	IPR017930	Myb domain
SuperFamily	SSF46689	1.52E-17	195	255	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.5E-28	196	255	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-26	197	252	IPR006447	Myb domain, plants
Pfam	PF00249	3.1E-9	199	250	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MGSLGDELSL GSICGSRRGV SKIIMNVVAV EKVEEHVKKL EEEKRKIESS ELELPLSLQL 60 LNDAILYLKE ENKRCSEMDT QPLLKDFISL NKPIREEIDM QLLKREELMR EKKFQLWRAN 120 DDHISNTKIK NKLGIERNGE KSSMLLIPKV ETGLGLGLTS SSIRRKGIVA SCGFTSNSMP 180 QPPPQQPAFL QQQALRKQRR CWTPELHRRF VDALQQLGGP GVATPKQIRE HMQEEGLTND 240 EVKSHLQKYR LHSRKPNSNA EKQSAVVLGF NLWNSSSQEE EQTGEGGESS KISNSQSDSP 300 QGPLQLPSTT TTTGGDSSME DAEDAKSESF QMERLRSP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00193	DAP	Transfer from AT1G49560	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26675s0216.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK221631	0.0	AK221631.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-96-G04.
GenBank	AY086694	0.0	AY086694.1 Arabidopsis thaliana clone 2686 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010479391.1	0.0	PREDICTED: myb family transcription factor EFM-like
Swissprot	Q9FX84	0.0	HHO6_ARATH; Transcription factor HHO6
TrEMBL	R0IIC6	0.0	R0IIC6_9BRAS; Uncharacterized protein
STRING	Bostr.26675s0216.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13927	18	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49560.1	1e-141	G2-like family protein

Link Out ? help Back to Top
Phytozome	Bostr.26675s0216.1.p

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]