PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26675s0133.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 483aa    MW: 54056.6 Da    PI: 6.2796
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26675s0133.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS529.51.1e-161544791374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l++lLl+cA++v+sg+l++a+a+L++ls+laspdgd+mqR+aayfteALa+r+++s+++lykal++++t+++n+see+++++lf+e++P
  Bostr.26675s0133.1.p  54 LIHLLLTCANHVASGNLQNANAALEQLSHLASPDGDTMQRIAAYFTEALANRILKSWPGLYKALNATQTRTNNVSEEIHVRRLFFEMFP 142
                           689************************************************************************************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                           ilk+s+l++N+aI ea+ege++vH+iD+d+s+++QW+aL+qa++sRpegpp+lRiTgv++    +ke l ++++rL + Ae+l++pf+f
  Bostr.26675s0133.1.p 143 ILKVSYLLTNRAIIEAMEGEKMVHVIDLDASEPAQWLALIQAFNSRPEGPPHLRITGVHH----QKEVLDQMAHRLIEEAEKLDIPFQF 227
                           ************************************************************....9************************ PP

                  GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrll..................................................... 214
                           n+ v++rl++l++e+Lrvk+gEala+++vlqlh++l                                                     
  Bostr.26675s0133.1.p 228 NP-VVSRLDCLNVEQLRVKTGEALAISSVLQLHTFLasdddlmrkncalrfqnnpsgidlqrvlvmshgsaaeapendmsnnngyspsg 315
                           **.7************************************************************************************* PP

                  GRAS 215 ..desvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                             ++s++l+s  ++d++L+++++lsPkv+vv+eq++dhn+++++er+le+l++y+alfd+le+k+pr+s++rikvE++++g+ei+n+++
  Bostr.26675s0133.1.p 316 dsASSLPLPSsgRTDSFLNAIWGLSPKVMVVTEQDSDHNGSTLMERLLESLYTYAALFDCLETKVPRTSQDRIKVEKMFFGEEIKNIIS 404
                           9977777777779**************************************************************************** PP

                  GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                           ceg+errerhe+lekW++r++ aGF++vpls++a+ qa++ll+ +++dgyr++eesg++v++W+drpL+svSaWr
  Bostr.26675s0133.1.p 405 CEGSERRERHEKLEKWSQRIDLAGFGNVPLSYYAMLQARRLLQGCGFDGYRIKEESGCAVICWQDRPLYSVSAWR 479
                           **************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.0428459IPR005202Transcription factor GRAS
PfamPF035143.7E-15954479IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MVAMLQEDNA TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT  60
CANHVASGNL QNANAALEQL SHLASPDGDT MQRIAAYFTE ALANRILKSW PGLYKALNAT  120
QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAIIEAME GEKMVHVIDL DASEPAQWLA  180
LIQAFNSRPE GPPHLRITGV HHQKEVLDQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE  240
QLRVKTGEAL AISSVLQLHT FLASDDDLMR KNCALRFQNN PSGIDLQRVL VMSHGSAAEA  300
PENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME  360
RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMFFGEEIK NIISCEGSER RERHEKLEKW  420
SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC  480
RK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-40374811380Protein SCARECROW
5b3h_D2e-40374811380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26675s0133.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0125610.0AC012561.2 Arabidopsis thaliana chromosome I BAC F11F12 genomic sequence, complete sequence.
GenBankAY0561540.0AY056154.1 Arabidopsis thaliana putative scarecrow 3 protein (At1g50420) mRNA, complete cds.
GenBankAY0912600.0AY091260.1 Arabidopsis thaliana putative scarecrow 3 protein (At1g50420) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500605.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_010500606.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_010500607.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLR0GWE70.0R0GWE7_9BRAS; Uncharacterized protein
STRINGBostr.26675s0133.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]