PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26675s0109.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family RAV
Protein Properties Length: 366aa    MW: 41410.8 Da    PI: 8.3352
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26675s0109.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.16.6e-1155101254
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                           +ykGV +   +g W A+I+       + kr++lg+f +a eAa a++ a  kl+
  Bostr.26675s0109.1.p  55 KYKGVVQQQ-NGHWGAQIYA------NhKRIWLGTFISAAEAATAYDSASIKLR 101
                           8****9888.8******999......44*********************99997 PP
2B389.82.1e-28185283184
                           EEEE-..-HHHHTT-EE--HHH.HTT................---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 
                           f+k+ltpsdv+k++rlv+pkk+a ++                g      ++++++++d+  r+W+++++y+k+s+++v+t+GW++Fvk+
  Bostr.26675s0109.1.p 185 FQKELTPSDVGKLNRLVIPKKYAVTYipfisddqneredgkiG---GavKDVEIVFYDRAMRQWKFRYCYWKSSQSFVFTRGWNSFVKE 270
                           99****************************9987766666642...044999************************************* PP

                           HT--TT-EEEEEE CS
                    B3  72 ngLkegDfvvFkl 84 
                           ++Lke+D++vF+ 
  Bostr.26675s0109.1.p 271 KNLKEKDVIVFYT 283
                           ***********94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-555101IPR001471AP2/ERF domain
PROSITE profilePS5103217.05655112IPR001471AP2/ERF domain
SMARTSM003802.3E-1555118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1555112IPR001471AP2/ERF domain
CDDcd000189.75E-2255113No hitNo description
SuperFamilySSF541715.1E-1355113IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.102.8E-32180283IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-27183284IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-25184282No hitNo description
PROSITE profilePS5086312.153185298IPR003340B3 DNA binding domain
PfamPF023628.1E-26185285IPR003340B3 DNA binding domain
SMARTSM010192.9E-22185299IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSKNIDDTKT ETSGSSGSSD SFLLLKKRIG LIDEPEKALV VASATKTVAV SGNVKYKGVV  60
QQQNGHWGAQ IYANHKRIWL GTFISAAEAA TAYDSASIKL RRFDANSHRN FPWPDITVHE  120
LNFQDCYTTE AVLNMIRDGS YQHKFRDFLR IRSQIVASIN IGGSKQVRGE GDQESDKCFS  180
CTQLFQKELT PSDVGKLNRL VIPKKYAVTY IPFISDDQNE REDGKIGGAV KDVEIVFYDR  240
AMRQWKFRYC YWKSSQSFVF TRGWNSFVKE KNLKEKDVIV FYTCDVPNNV KTLEGQSKNF  300
LMIDVHYFSD NGSVVPEEVS MTVHNSSEEG MKTENFVSSK LKDVETKSEE NKGSFMLFGV  360
RIQCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-2518428113100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26675s0109.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0792790.0AC079279.4 Arabidopsis thaliana chromosome 1 BAC F17J6 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002894269.20.0AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6P50.0RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLD7KGR60.0D7KGR6_ARALL; Uncharacterized protein
STRINGBostr.26675s0109.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.10.0RAV family protein