PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.26675s0071.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | AP2 | ||||||||
Protein Properties | Length: 569aa MW: 62233.1 Da PI: 6.8282 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.5 | 1.2e-11 | 189 | 245 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g Bostr.26675s0071.1.p 189 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 245 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 47 | 6.3e-15 | 290 | 339 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Bostr.26675s0071.1.p 290 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 339 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.2E-9 | 189 | 245 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.94E-19 | 189 | 255 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-15 | 189 | 254 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.57 | 190 | 253 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-23 | 190 | 259 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-12 | 190 | 253 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 191 | 202 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.98E-24 | 288 | 349 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-18 | 288 | 348 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.506 | 289 | 347 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-32 | 289 | 353 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-18 | 289 | 347 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-9 | 290 | 339 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 329 | 349 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 569 aa Download sequence Send to blast |
MNSNNWLAFP LSPTHSSLPP HIHSSQTSHF NLGLVNDNID NPFQNQEWNM INPHGGGGEG 60 GEVPKVADFL GVSKSGNHHP DHNLVPYNDI HQTNDSDYYF QTNSLLPTVV TCASNTPNNY 120 ELQESAHNLQ SLTLSMGSTG AAAAAAATVK ASPGETSADN SSSTTNTSGG AIVEATPRRT 180 LETFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDLAA 240 LKYWGPSTTT NFPITNYEKE VEEMKHMTRQ EFVASIRRKS SGFSRGASMY RGVTRHHQHG 300 RWQARIGRVA GNKDLYLGTF STEEEAAEAY DIAAIKFRGL NAVTNFEINR YDVKAILESN 360 TLPIGGGAAK RLKEAQALES SRKREEMIAL GSNFHQYGAA SGSSSVASSS RLQLQPYPLS 420 IQQPFEHLHH QPLLTLQNNN DMSQYNTNAH DSYSYIQTQL HLHQQQTNNY LQSSSHSSQL 480 YNAYLQSNPG LLHGFVSDNS NTLGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG 540 GATGYGGWNT GESVQGSNPG GVFTMWNE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.26675s0071.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY506550 | 0.0 | AY506550.1 Arabidopsis thaliana PLETHORA2 (PLT2) mRNA, complete cds. | |||
GenBank | BT020277 | 0.0 | BT020277.1 Arabidopsis thaliana At1g51190 mRNA, complete cds. | |||
GenBank | BT020460 | 0.0 | BT020460.1 Arabidopsis thaliana At1g51190 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010461951.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | V4KGN8 | 0.0 | V4KGN8_EUTSA; Uncharacterized protein | ||||
STRING | Bostr.26675s0071.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3015 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.26675s0071.1.p |