PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26527s0463.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 531aa    MW: 57978.6 Da    PI: 4.6628
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26527s0463.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS427.88.5e-1311645231374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           lv++L++cAeav++g+l+la+al++r+  la++++ +m ++a+yf+eALa+r++r        ++ps++s +   ee+     f++ sP
  Bostr.26527s0463.1.p 164 LVQALVACAEAVQQGNLSLADALVKRVGSLAASQAGAMGKVATYFAEALARRIYR--------IHPSSASIDPFFEEILQ-MNFYDSSP 243
                           689****************************************************........55555553334444333.45****** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                           +lkf+h+taNqaIleav  ++ vH+iD++++qG+QWpaL+qaLa Rp+gpps+R+Tgvg+p+  ++e ++e+g++L+++A+++gv+fef
  Bostr.26527s0463.1.p 244 YLKFAHFTANQAILEAVTMARGVHVIDLGLNQGMQWPALMQALALRPGGPPSFRLTGVGAPS--NREGIQELGSKLTQLAQAIGVEFEF 330
                           ************************************************************88..9************************ PP

                  GRAS 179 nvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                           + +++++l+dle+++++++p  E+l+Vn+v++lh +l +++s+e+    +L +vk ++P +v+vveqea+hn+  Flerf eal+yys+
  Bostr.26527s0463.1.p 331 SGVTTEKLSDLEPDMFETRPeSETLVVNSVFELHPVLCRPGSIEK----LLATVKAVKPSIVTVVEQEANHNGVVFLERFNEALHYYSS 415
                           ********************9****************99999999....**************************************** PP

                  GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee 354
                           lfdsle  +   s++r+ +++++lgr+i nvva+eg +r+erhetl++Wr+r+++aGF pv+l+++a kqa+lll+ ++ +dgyrvee+
  Bostr.26527s0463.1.p 416 LFDSLEDRVVIPSQDRV-MSEVYLGRQILNVVAAEGIDRIERHETLAQWRKRMGSAGFDPVNLGSHAFKQASLLLALFGsGDGYRVEES 503
                           ********988888775.56677****************************************************************** PP

                  GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                           +gsl+l W+ +pL+++SaW+
  Bostr.26527s0463.1.p 504 DGSLMLAWQMKPLIAASAWK 523
                           *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.2E-3038107IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011299.2E-3438113No hitNo description
PROSITE profilePS5098564.122138502IPR005202Transcription factor GRAS
PfamPF035142.9E-128164523IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MTKRSHQETF VEEAPSMAEI GKKVEGSSGG GGGDDNIDEL LAALGYKVRS SDMADVAQKL  60
EHLEMVLSND IDVVGSSNNF LTDTVHYNPS DLSGWAQTML SELNYYPDLD PTPICDLRPL  120
TDDDECCSSN SNSNKRIRLS PWCDSVSSES TRSVLLIEET GVRLVQALVA CAEAVQQGNL  180
SLADALVKRV GSLAASQAGA MGKVATYFAE ALARRIYRIH PSSASIDPFF EEILQMNFYD  240
SSPYLKFAHF TANQAILEAV TMARGVHVID LGLNQGMQWP ALMQALALRP GGPPSFRLTG  300
VGAPSNREGI QELGSKLTQL AQAIGVEFEF SGVTTEKLSD LEPDMFETRP ESETLVVNSV  360
FELHPVLCRP GSIEKLLATV KAVKPSIVTV VEQEANHNGV VFLERFNEAL HYYSSLFDSL  420
EDRVVIPSQD RVMSEVYLGR QILNVVAAEG IDRIERHETL AQWRKRMGSA GFDPVNLGSH  480
AFKQASLLLA LFGSGDGYRV EESDGSLMLA WQMKPLIAAS AWKLATELRR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-6415852213378Protein SCARECROW
5b3h_A7e-6415852212377Protein SCARECROW
5b3h_D7e-6415852212377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Its activity may be regulated by phytohormones such as auxin and ethylene (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26527s0463.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172260.0AK117226.1 Arabidopsis thaliana At5g17490 mRNA for RGA-like protein, complete cds, clone: RAFL16-78-A02.
GenBankAL3911500.0AL391150.1 Arabidopsis thaliana DNA chromosome 5, BAC clone K3M16 (ESSA project).
GenBankBT0059050.0BT005905.1 Arabidopsis thaliana At5g17490 gene, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420475.10.0PREDICTED: DELLA protein RGL3
RefseqXP_010453948.10.0PREDICTED: DELLA protein RGL3-like
SwissprotQ9LF530.0RGL3_ARATH; DELLA protein RGL3
TrEMBLR0H0W30.0R0H0W3_9BRAS; Uncharacterized protein
STRINGBostr.26527s0463.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.10.0RGA-like protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wild M,Achard P
    The DELLA protein RGL3 positively contributes to jasmonate/ethylene defense responses.
    Plant Signal Behav, 2013. 8(4): p. e23891
    [PMID:23425858]
  3. Shi H,Wei Y,Wang Q,Reiter RJ,He C
    Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis.
    J. Pineal Res., 2016. 60(3): p. 373-9
    [PMID:26887824]
  4. Shi H,Liu W,Wei Y,Ye T
    Integration of auxin/indole-3-acetic acid 17 and RGA-LIKE3 confers salt stress resistance through stabilization by nitric oxide in Arabidopsis.
    J. Exp. Bot., 2017. 68(5): p. 1239-1249
    [PMID:28158805]
  5. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]