PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.26527s0427.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MYB | ||||||||
Protein Properties | Length: 335aa MW: 37812 Da PI: 8.1605 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 93 | 138 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+++ gR++k+c++rw++ Bostr.26527s0427.1.p 93 RGHWRPTEDAKLKELVAQFGPQNWNLIAHHLL-GRSGKSCRLRWFNQ 138 899****************************9.***********996 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.3e-16 | 146 | 188 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+eE+ +l+ a++ +G++ W+ I+r ++ gRt++ +k++w+ Bostr.26527s0427.1.p 146 RAFTEEEEFRLLAAHQAYGNK-WAMISRLFP-GRTDNAVKNHWHV 188 689******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.507 | 88 | 139 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-14 | 92 | 141 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-16 | 93 | 138 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.0E-28 | 93 | 186 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-25 | 94 | 146 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.65E-13 | 96 | 137 | No hit | No description |
PROSITE profile | PS51294 | 23.723 | 140 | 194 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-13 | 144 | 192 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-13 | 146 | 187 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-19 | 147 | 193 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.35E-10 | 147 | 187 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0071367 | Biological Process | cellular response to brassinosteroid stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MNPNLLEKDL KGNETINGSR RFEDANNFGS LPNSPTPSCK TPLTYLSLSR NHPHNKSASV 60 LESEDEHEKE KGENEKSLGM RGKSGINTKV CSRGHWRPTE DAKLKELVAQ FGPQNWNLIA 120 HHLLGRSGKS CRLRWFNQLD PRINKRAFTE EEEFRLLAAH QAYGNKWAMI SRLFPGRTDN 180 AVKNHWHVIM ARRTRESQRQ RQQAPPAASR DAEMTVSSSC RYNHGEFFGN VTKGSFVNEE 240 DDEDDDDGSA VSTCTTELSL TPPSSAYQPR FLNYDNTLAS GKDGQCVQRA EVNGIYGKKM 300 DHQNHHTITG SERKVEMKMK SGFYFFDFLG VEAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 93 | 193 | 7 | 107 | B-MYB |
1h88_C | 7e-31 | 93 | 194 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 7e-31 | 93 | 194 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a cell-specific local repressor of quiescent center (QC) self-renewal by cell divisions in the primary root. Counteracts brassinosteroid (BR)-mediated cell division in the QC cells (PubMed:24981610). Regulates maternally seed size, especially before the heart stage, promoting both endothelial cells expansion and cell number in the outer integument layer of the seed coat (PubMed:23911125). Modulates the expression of genes involved in cell wall metabolism such as cell division and expansion (PubMed:23911125, PubMed:24981610). Negative regulator of flowering via the repression of FT transcription (PubMed:25343985). {ECO:0000269|PubMed:23911125, ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00516 | DAP | Transfer from AT5G17800 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.26527s0427.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Levels follow a circadian cycle with a progressive decrease during the day time (at protein level) (PubMed:25343985). Down-regulated by brassinosteroids (BRs) in a dose- and time-dependent manner. Repressed by BES1. Auto-activation of expression (PubMed:24981610). Targeted to 26S proteasomal degradation by the CULLIN3 (CUL3)-based E3 ligases CRL3(BPMs) (PubMed:25343985). {ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK176193 | 0.0 | AK176193.1 Arabidopsis thaliana mRNA for MYB56 R2R3-MYB factor family member, complete cds, clone: RAFL23-05-P12. | |||
GenBank | AK176277 | 0.0 | AK176277.1 Arabidopsis thaliana mRNA for MYB56 R2R3-MYB factor family member, complete cds, clone: RAFL23-20-A13. | |||
GenBank | AY519627 | 0.0 | AY519627.1 Arabidopsis thaliana MYB transcription factor (At5g17800) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010492746.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | Q6R053 | 0.0 | MYB56_ARATH; Transcription factor MYB56 | ||||
TrEMBL | D7LXM8 | 0.0 | D7LXM8_ARALL; AtMYB56 | ||||
STRING | Bostr.26527s0427.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9977 | 18 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17800.1 | 0.0 | myb domain protein 56 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.26527s0427.1.p |
Publications ? help Back to Top | |||
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