PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.26527s0412.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | B3 | ||||||||
Protein Properties | Length: 304aa MW: 34895.3 Da PI: 10.0863 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.6 | 2.7e-19 | 19 | 111 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 ffk+l ++d +++ + ++p + +++++ k +s++++l+ ++g sW vk+ +k++ y+ +GW++Fv++ngL e++ ++F+++ ++ Bostr.26527s0412.1.p 19 FFKILRREDLSSEIMRMIPHDLIRSISD-KSSSFKMVLKVPWGSSWPVKI--SKNPYFhYMEDRGWNQFVNDNGLGENEYLTFTHEANM 104 99************************64.5799*****************..99998857777**********************999* PP EE..EEEEE CS B3 89 efelvvkvf 97 +f +v ++ Bostr.26527s0412.1.p 105 CF--NVNIY 111 *9..66665 PP | |||||||
2 | B3 | 49.9 | 5.7e-16 | 224 | 301 | 15 | 97 |
-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 l +pkkf++ h+ + e+k+ ++ +++g +sWev++ ++ + +++GW++ +k+ gL +gD+++Fkl++ +e++vkv Bostr.26527s0412.1.p 224 YLAIPKKFVDMHMPN--ETKMFKIHHPRGkKSWEVTY--VVSDVQSRFSAGWSRLAKELGLVVGDVCTFKLIK--PTEMCVKVS 301 478*********855..66799999*99989******..666666679**********************987..666788876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-19 | 14 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-20 | 14 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.20E-18 | 17 | 111 | No hit | No description |
PROSITE profile | PS50863 | 12.957 | 19 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.3E-23 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-17 | 19 | 111 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-19 | 210 | 301 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.61E-20 | 210 | 300 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.252 | 210 | 303 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.94E-16 | 211 | 302 | No hit | No description |
SMART | SM01019 | 4.6E-17 | 213 | 303 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.4E-12 | 222 | 300 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009553 | Biological Process | embryo sac development | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MVKNRVFGQV MERGDNPAFF KILRREDLSS EIMRMIPHDL IRSISDKSSS FKMVLKVPWG 60 SSWPVKISKN PYFHYMEDRG WNQFVNDNGL GENEYLTFTH EANMCFNVNI YEADGKEMLR 120 PRQSSTIASS SEERKSIYID LKKEGEIESC SESSYPGLKT AESTSGRLKQ KQELNLRKKK 180 AEETKKSKKR VKRKVDTVCD DSEAGTSSLV PKFKLTIKKS HLLYLAIPKK FVDMHMPNET 240 KMFKIHHPRG KKSWEVTYVV SDVQSRFSAG WSRLAKELGL VVGDVCTFKL IKPTEMCVKV 300 SKE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 178 | RLKQKQELNLRKK |
2 | 184 | 192 | KKSKKRVKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.26527s0412.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227035 | 0.0 | AK227035.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-55-P16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010454021.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g18000-like | ||||
Swissprot | Q9FJG2 | 1e-168 | Y5800_ARATH; B3 domain-containing protein At5g18000 | ||||
TrEMBL | R0FIQ9 | 0.0 | R0FIQ9_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.26527s0412.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18000.1 | 1e-165 | VERDANDI |
Link Out ? help Back to Top | |
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Phytozome | Bostr.26527s0412.1.p |
Publications ? help Back to Top | |||
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