PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.26527s0404.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 267aa MW: 31005.8 Da PI: 8.6673 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80.9 | 2.7e-25 | 14 | 144 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkya..tgkrknra....tksgy 82 +GfrFhP+d+el+++yL +kv++k+++++e ++ iy ePw+ + +++ e +ew++F++r + ++ t+k ++r+ t +g Bostr.26527s0404.1.p 14 VGFRFHPSDQELIMYYLGPKVAKKSNKEFELEDKNYIYAKEPWSSTH-TETdffEPNEWFYFVTRIQVSEnvTEKCTSRKvkgeTCEGC 101 7************************99988677778********973.222345778*******9998873334444454344477*** PP NAM 83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 Wka gk ++v+s+ +ge++g k++L f g++ + + W+m ey+ Bostr.26527s0404.1.p 102 WKAPGKLRDVVSEdTGEVIGEKRSLSFK-GET---KASGWTMTEYST 144 ***********9978899*********8.443...4589******85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.086 | 12 | 170 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.45E-25 | 13 | 150 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-18 | 14 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MSMVEKYYDK EQEVGFRFHP SDQELIMYYL GPKVAKKSNK EFELEDKNYI YAKEPWSSTH 60 TETDFFEPNE WFYFVTRIQV SENVTEKCTS RKVKGETCEG CWKAPGKLRD VVSEDTGEVI 120 GEKRSLSFKG ETKASGWTMT EYSTTVAHSK IKFSAMFKDH DSVFCKNSAF SDDFFDGRSS 180 VGHFRLISDN EASTFWLTES RRSFPTVNQK SMSFQRYNSV GKADKITMVN QWKSDRFSIK 240 VTTDFPRTRN SKINNKINLL RLCDRT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.26527s0404.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020877802.1 | 3e-74 | protein CUP-SHAPED COTYLEDON 1 | ||||
TrEMBL | R0HBL0 | 2e-68 | R0HBL0_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Bostr.26527s0404.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14744 | 8 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18300.1 | 7e-40 | NAC domain containing protein 88 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.26527s0404.1.p |