PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.26527s0401.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | B3 | ||||||||
Protein Properties | Length: 230aa MW: 26338.3 Da PI: 9.8596 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.7 | 2.7e-10 | 19 | 89 | 1 | 73 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkang 73 ffk+l +++ +++ + +p f++++++ +e+s +++l+ ++g sW+v++ +++++ y+++ + W +F ++ng Bostr.26527s0401.1.p 19 FFKILPRAYLSSEIMRGIPLIFIKSISE-EESSAKMVLKVSWGSSWTVRI--SRNPSFYFMEkNEWDQFLSDNG 89 8999999999999999*******99965.57899****************..9999997766266********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.0E-9 | 12 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-8 | 13 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.29E-8 | 17 | 89 | No hit | No description |
SMART | SM01019 | 0.0019 | 19 | 112 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-9 | 19 | 89 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-5 | 164 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-7 | 166 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MDKNRAFGKI MDDADNPGFF KILPRAYLSS EIMRGIPLIF IKSISEEESS AKMVLKVSWG 60 SSWTVRISRN PSFYFMEKNE WDQFLSDNGN NGKELLRPRK SATTVASSSG LNKREQRKNI 120 YKDVKKKEVE SSSESSYPGL ISAESKKNKM KVETVCDDSE DDSSSIVPEF TINIKKSYLI 180 FLGIPKMFME LHMPKETTMF KIHDPEGKKS WDVMYKITGI QSRFVWPKI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.26527s0401.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY087853 | 1e-81 | AY087853.1 Arabidopsis thaliana clone 38961 mRNA, complete sequence. | |||
GenBank | BT004099 | 1e-81 | BT004099.1 Arabidopsis thaliana clone RAFL15-45-L21 (R20966) unknown protein (At5g18090) mRNA, complete cds. | |||
GenBank | BT005553 | 1e-81 | BT005553.1 Arabidopsis thaliana clone U20966 unknown protein (At5g18090) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006290043.1 | 1e-108 | B3 domain-containing protein At5g18090 | ||||
Swissprot | Q9FK61 | 1e-104 | Y5809_ARATH; B3 domain-containing protein At5g18090 | ||||
TrEMBL | R0FLU3 | 1e-106 | R0FLU3_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.26527s0401.1.p | 1e-166 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18090.1 | 2e-95 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.26527s0401.1.p |
Publications ? help Back to Top | |||
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