PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.26527s0378.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 115aa MW: 13393 Da PI: 5.2698 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 27.6 | 8.2e-09 | 26 | 86 | 36 | 103 |
NAM 36 evdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103 + diy ePw+L ++++++fF++ ++ kr+nr++k Wkatg+ k+++sk++ + g Bostr.26527s0378.1.p 26 KDDIYAKEPWQLS-----HTENVFFFFEPNEWFYLVKRTNRKVK--GWKATGELKDIVSKNTVEGGKS 86 569*********7.....34555555555555556799***877..5************655443333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02365 | 1.2E-4 | 5 | 97 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.72E-16 | 7 | 111 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MVEEFYAEEE ELVGFRFNPS EDNRDKDDIY AKEPWQLSHT ENVFFFFEPN EWFYLVKRTN 60 RKVKGWKATG ELKDIVSKNT VEGGKSKTSG WTMTEYSPIG KSFQNQVLCH LKGP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.26527s0378.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_197331.1 | 5e-40 | NAC domain containing protein 88 | ||||
TrEMBL | A0A178UJG9 | 3e-40 | A0A178UJG9_ARATH; NAC088 | ||||
STRING | Bostr.26527s0378.1.p | 3e-80 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14744 | 8 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18300.1 | 1e-43 | NAC domain containing protein 88 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.26527s0378.1.p |