PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26527s0315.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family FAR1
Protein Properties Length: 775aa    MW: 89222.5 Da    PI: 7.7765
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26527s0315.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.52.9e-2044118189
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           ++Yn+YA ++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rtgC+a ++v+++++gkw+++++++eHnHel
  Bostr.26527s0315.2.p  44 EYYNAYAVRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 118
                           69**************************************876..............589***************************98 PP
2FAR167.73e-21211287191
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           +fY++YA+ vGF+vr+ +  +sk +g+it+r+fvCs+eg+++++              r+gC a +++k++++g w v++l+++HnH+l
  Bostr.26527s0315.2.p 211 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSREGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHDL 285
                           6***************************************9994..............799***************************9 PP

                  FAR1  90 ap 91 
                            p
  Bostr.26527s0315.2.p 286 EP 287
                           75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.9E-1644118IPR004330FAR1 DNA binding domain
PfamPF031019.8E-17211287IPR004330FAR1 DNA binding domain
PfamPF105511.2E-24386478IPR018289MULE transposase domain
PROSITE profilePS5096610.126660696IPR007527Zinc finger, SWIM-type
SMARTSM005754.5E-7671698IPR006564Zinc finger, PMZ-type
PfamPF044342.9E-7672693IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MVAKAYPVRI LHHNNNGITE DEEGGSGVEP YVGLEFDTAE EAREYYNAYA VRTGFKVRTG  60
QLYRSRTDGT VSSRRFVCSK EGFQLNSRTG CTAFIRVQRR DTGKWVLDQI QKEHNHELGG  120
EGHVEETTPR PSRAPAPTKL GVTVNPHRPK MKVVDESDRG TRSCPGGFKR FKGGAEGEVS  180
DDHHQAQQPK AVTGTEPYAG LEFGSANEAC QFYQAYAEVV GFRVRIGQLF RSKVDGSITS  240
RRFVCSREGF QHPSRMGCGA YMRIKRQDSG GWIVDRLNKD HNHDLEPGKK NDAGMKKITD  300
NGTGGLDSVD LIELNDFGNN HIKKTRENRI GKEWYPLLLD YFQSRQTEDM GFFYAVELDV  360
NNGSCMSIFW ADSRARFACS QFGDSVFFDT SYRKGNYSVP FATIIGFNHH RQPVLLGCAM  420
VADESKEAFL WLFQTWLRAM SGRPPRSIVA DQDLPIQQAL VQVFPRAHHR YSAWQIREKE  480
QENLRLFPSE FKYEYEKCIY QTQTTVEFDS VWNSLINKYG LRDDIWLREI YEQRENWVPA  540
YLRTSFFAGI PINGTIEPFF GASLDALTPL REFISRYEQA LEQRREEERK EDFNSYNLQP  600
FLQTKEPVEE QCRRLYTLTV FRIFQSELVQ SYNYLCLKTY EEGAISRFLV RKCGNENEKH  660
AVTFSASNLN SGCSCQMFEH EGILCRHILK VFNLLDIREL PSRYILHRWT KNAEFGFVRD  720
MESGVSAQDL KALMVWSLRE AASKYIEFGT SSLEKYKLAY EIMREGGKKL CWQR*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26527s0315.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0686550.0AC068655.3 Genomic Sequence For Arabidopsis thaliana Clone F17K4 From Chromosome V, complete sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286363.10.0protein FAR1-RELATED SEQUENCE 12 isoform X1
SwissprotQ3E7I50.0FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12
TrEMBLR0FBV10.0R0FBV1_9BRAS; Uncharacterized protein
STRINGBostr.26527s0315.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.10.0FAR1-related sequence 12
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]