PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26527s0101.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family EIL
Protein Properties Length: 523aa    MW: 59352.1 Da    PI: 6.6244
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26527s0101.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3390.22.9e-119484101354
                           XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasd 89 
                           eel+k+ w+d+++lkrlke+ k  ++++     ++  ++  +++++++m +aQDgiLkYM k+me ++aqGfvYgi+ e+gk+v+g+sd
  Bostr.26527s0101.1.p  48 EELEKKIWRDKQRLKRLKEMAKIGIGKRLL---KQHDDDFPQHSSKRTMYKAQDGILKYMSKTMERYKAQGFVYGIVLENGKTVTGSSD 133
                           8*********************99866655...777889************************************************** PP

                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S-- CS
                  EIN3  90 sLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGke 178
                           +Lr+WWk+kv+fdrngpaai+k+q + + ++g++  +  +  + h+l elqDTtlg+LLsalm hc+ppqrrfpl+kgv+pPWWPtGke
  Bostr.26527s0101.1.p 134 NLREWWKDKVRFDRNGPAAIMKHQREINPSDGSDLGSEVGDCTAHKLLELQDTTLGALLSALMPHCKPPQRRFPLDKGVTPPWWPTGKE 222
                           ***********************9888887777777777999*********************************************** PP

                           HHHHHHT--TT--...-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX.. CS
                  EIN3 179 lwwgelglskdqg..tppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah.. 263
                           +ww++l+l++d +  +ppykkphdlkk wkv+vL  vi+hm+ +i++i +l+r+s++lq+km+++e + +l+ ln+e++ +++++    
  Bostr.26527s0101.1.p 223 DWWDQLSLPEDCRglPPPYKKPHDLKKLWKVGVLIGVIRHMASDISNIPNLVRRSRSLQEKMTSREGALWLAALNREKAVVDQIHNPft 311
                           *************************************************************************************9966 PP

                           .XX.........XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXX CS
                  EIN3 264 .ss.........slrkqspkvtlsceqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesakvsskevsrtcqssqfrgseteli 342
                            s+            +++++v + +++++dveg   s+  + q  +  ++f+ v krk + +   +++ +    tc++s +++s+++++
  Bostr.26527s0101.1.p 312 fSRennntcnflVPGTSDTDVLFPESANYDVEGIGGSHPFNPQYPDVDNNFNSVYKRKFEGDLGISMHPT--LLTCENSLCPYSQPQMG 398
                           533667777654333489999999999*****88888888999999999********9766666666555..89*************** PP

                           XXXXXXXXXXXX CS
                  EIN3 343 fadknsisqney 354
                           f+d++ ++++++
  Bostr.26527s0101.1.p 399 FHDRTLRENHQM 410
                           **********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048739.0E-11348300No hitNo description
Gene3DG3DSA:1.10.3180.102.7E-61173308IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167687.85E-54177303IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MDMYSNNRGL FRGLVCSPVP PFTEGDVCSD SHNALCDDLS SDEEMEIEEL EKKIWRDKQR  60
LKRLKEMAKI GIGKRLLKQH DDDFPQHSSK RTMYKAQDGI LKYMSKTMER YKAQGFVYGI  120
VLENGKTVTG SSDNLREWWK DKVRFDRNGP AAIMKHQREI NPSDGSDLGS EVGDCTAHKL  180
LELQDTTLGA LLSALMPHCK PPQRRFPLDK GVTPPWWPTG KEDWWDQLSL PEDCRGLPPP  240
YKKPHDLKKL WKVGVLIGVI RHMASDISNI PNLVRRSRSL QEKMTSREGA LWLAALNREK  300
AVVDQIHNPF TFSRENNNTC NFLVPGTSDT DVLFPESANY DVEGIGGSHP FNPQYPDVDN  360
NFNSVYKRKF EGDLGISMHP TLLTCENSLC PYSQPQMGFH DRTLRENHQM TCPYKVTSFY  420
QPTKPYGMPG LMVPCPDYNR MQQQVQSIQD NFNPPNNIYR PKAEQRGGNN DGLLEDLSPS  480
PLMLNHNPGL VLPTDFNGDA EQVGMENNLQ NQGQGLPTSW IQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A5e-541763072131Protein ETHYLENE INSENSITIVE 3
4zds_B5e-541763072131Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26527s0101.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0693250.0AC069325.6 Genomic Sequence For Arabidopsis thaliana Clone T10F18 From Chromosome V, complete sequence.
GenBankAC1409770.0AC140977.1 Arabidopsis thaliana chromosome 5 BAC F13M11 genomic sequence, complete sequence.
GenBankAF0042140.0AF004214.1 Arabidopsis thaliana ethylene-insensitive3-like2 (EIL2) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287498.10.0ETHYLENE INSENSITIVE 3-like 2 protein
SwissprotO231150.0EIL2_ARATH; ETHYLENE INSENSITIVE 3-like 2 protein
TrEMBLR0FER20.0R0FER2_9BRAS; Uncharacterized protein
STRINGBostr.26527s0101.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147191621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21120.10.0ETHYLENE-INSENSITIVE3-like 2