PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.26326s0088.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | GeBP | ||||||||
Protein Properties | Length: 319aa MW: 35920.1 Da PI: 5.1606 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 99.6 | 2.7e-31 | 63 | 154 | 6 | 97 |
DUF573 6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 +w+eeDe+++L+Gl+d++ak g + + ++dafy+f+ +si +k+s++q+++Kir+LK++f +++k+ +g++p+f++++d+++f++s++ Bostr.26326s0088.1.p 63 IWNEEDELAVLKGLVDYRAKSGFQTKINWDAFYRFLGGSIVAKFSNDQVLSKIRKLKRRFLVHWEKIIEGNDPKFTRSSDSEAFGFSMM 151 8**************************************************************************************** PP DUF573 95 iWg 97 iWg Bostr.26326s0088.1.p 152 IWG 154 **8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 6.1E-23 | 63 | 154 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MVSPKQLDFS SSGGADDTFS RQRSPRNPSS KRAASDAAEE AEEETKKKKK KKTKLGSPLS 60 IPIWNEEDEL AVLKGLVDYR AKSGFQTKIN WDAFYRFLGG SIVAKFSNDQ VLSKIRKLKR 120 RFLVHWEKII EGNDPKFTRS SDSEAFGFSM MIWGHNEADF AHDDDGIYKE MLKEHEEPVN 180 ENGAAKITDN GTARIAQQSE SGEEMFKEHE EVAGAEPFNE NGAAKTVENG STAGKESHDD 240 DDELCAVRDA FETLMSQGLS DYQKKLQLEK LMNIETGKRR ELSDEWKALC VEERRLIIEK 300 LRFSAKLAEA LDETKKPL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 51 | KKKKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May play redundant roles with GEBP and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893, ECO:0000305|PubMed:18162594}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.26326s0088.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010429565.1 | 1e-152 | PREDICTED: GLABROUS1 enhancer-binding protein-like 1 | ||||
Swissprot | Q8VYD2 | 1e-135 | STKLH_ARATH; GLABROUS1 enhancer-binding protein-like 1 | ||||
TrEMBL | R0G0S3 | 1e-146 | R0G0S3_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.26326s0088.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6117 | 17 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25650.1 | 1e-135 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Bostr.26326s0088.1.p |
Publications ? help Back to Top | |||
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