PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26326s0017.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

M-type_MADS

Protein Properties

Length: 70aa MW: 8228.73 Da PI: 10.3241

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26326s0017.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	32.5	1.1e-10	9	39	1	31
S---SHHHHHHHHHHHHHHHHHHHHHHHHHH CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLC 31 krie r+ +skR++gilKKAeEL L Bostr.26326s0017.1.p 9 KRIECPKERSSKYSKRKKGILKKAEELALLS 39 78999999*******************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	8.63E-13	1	52	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.6E-9	1	50	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.161	1	43	IPR002100	Transcription factor, MADS-box
CDD	cd00120	2.20E-11	2	39	No hit	No description
PRINTS	PR00404	1.7E-9	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-8	10	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-9	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
MGRKKIELKR IECPKERSSK YSKRKKGILK KAEELALLSL SQMLKEFCNT SLPEREERFD 60 LSNFYFIIT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26326s0017.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010429654.2	3e-20	PREDICTED: agamous-like MADS-box protein AGL65
TrEMBL	R0HI12	1e-21	R0HI12_9BRAS; Uncharacterized protein (Fragment)
STRING	Bostr.26326s0017.1.p	2e-41	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7330	18	38

Link Out ? help Back to Top
Phytozome	Bostr.26326s0017.1.p