PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.2618s0061.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

NAC

Protein Properties

Length: 467aa MW: 53783.2 Da PI: 5.3721

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.2618s0061.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177	5.2e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeel+++yLk+k++g+++el e+i+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgk Bostr.2618s0061.1.p 6 LPPGFRFHPTDEELITYYLKRKINGREIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDQEWYFFSTRDRKYPNGSRTNRATKGGYWKATGK 94 79**************************.99***********6345667999**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++v +++++g+kktLv+y+grap+g +t Wvmheyrl Bostr.2618s0061.1.p 95 DRRVSW-RDRAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133 *9.8899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-62	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	60.827	6	157	IPR003441	NAC domain
Pfam	PF02365	8.1E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0090602	Biological Process	sieve element enucleation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DQEWYFFSTR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH 120 GIRTGWVMHE YRLDETECEP TAFGMQDAYA LCRVFKKIVI EAKPRDQHQQ QHQPYVHTSS 180 NLSGNSSFDV CSDLEISSNT HQVLLPYSNA TDTQPRFGNA NSIGVNTDME CEMLQHQMSL 240 PPLRVEKSPV RASDSCKRLN QNSSQSGFDD FTFAPSNSNQ FYNSNVDDHL RHIGNLDEQL 300 LDAGNSTWMR MSNENLNQSF IEEEGILPSF ESNDQDLEYY GGSRTNTINN IEIDDFFSFE 360 NDVEDNDNSN ITLNSSGVEM IEEEIIVNHK MLICTRQTTE ILYYQVVPSQ ILKIHISQVQ 420 GTEERAMLME ESKDSWFQKA ENVAKMKLKQ ISLVAKRYYK CLTIVF*

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DQEWYFFSTR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDETECEP TAFGMQDAYA LCRVFKKIVI EAKPRDQHQQ QHQPYVHTSS  180
NLSGNSSFDV CSDLEISSNT HQVLLPYSNA TDTQPRFGNA NSIGVNTDME CEMLQHQMSL  240
PPLRVEKSPV RASDSCKRLN QNSSQSGFDD FTFAPSNSNQ FYNSNVDDHL RHIGNLDEQL  300
LDAGNSTWMR MSNENLNQSF IEEEGILPSF ESNDQDLEYY GGSRTNTINN IEIDDFFSFE  360
NDVEDNDNSN ITLNSSGVEM IEEEIIVNHK MLICTRQTTE ILYYQVVPSQ ILKIHISQVQ  420
GTEERAMLME ESKDSWFQKA ENVAKMKLKQ ISLVAKRYYK CLTIVF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-53	4	157	15	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-53	4	157	15	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-53	4	157	15	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-53	4	157	15	165	NO APICAL MERISTEM PROTEIN
4dul_A	4e-53	4	157	15	165	NAC domain-containing protein 19
4dul_B	4e-53	4	157	15	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.2618s0061.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB005238	1e-124	AB005238.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKP11.
GenBank	CP002688	1e-124	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006290189.1	0.0	NAC domain-containing protein 86 isoform X1
Swissprot	Q9FFI5	0.0	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	R0FKW5	0.0	R0FKW5_9BRAS; Uncharacterized protein
STRING	Bostr.2618s0061.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4411	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	0.0	NAC domain containing protein 86

Link Out ? help Back to Top
Phytozome	Bostr.2618s0061.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]