PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.25993s0537.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

LBD

Protein Properties

Length: 260aa MW: 29256.1 Da PI: 7.1868

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.25993s0537.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.2	6.4e-39	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aCk+lrrkC k+Cv+apyf +eq +++fa++h++FGasn +kll++lp e+r++a+++++yeA+ar +dP+yG+v++i++lqqq+ Bostr.25993s0537.1.p 7 PCGACKFLRRKCIKGCVFAPYFFHEQgASHFAAIHQVFGASNASKLLSHLPMEDRREAATTIYYEAQARRQDPIYGCVSHIFSLQQQVV 95 7*********************9989********************************************************* PP DUF260 89 qlkaelallkee 100 +l+++l+ lk++ Bostr.25993s0537.1.p 96 NLQTQLEILKQQ 107 ******9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.508	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.4E-37	7	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MNGSGSPCGA CKFLRRKCIK GCVFAPYFFH EQGASHFAAI HQVFGASNAS KLLSHLPMED 60 RREAATTIYY EAQARRQDPI YGCVSHIFSL QQQVVNLQTQ LEILKQQATQ IMTARDSPSI 120 GNPNCYRDNK PQHLQEPQDL HLRHHHNNDH HHHHHQTTSN YQNRSLETEH NSDLKNIMTS 180 CYHQNETGTR SFIGAGGDTT AASYYYNSSS SGNCSEEINS TIGEFSKYSE LDQKLNTFNQ 240 YHHGGNDLLS ASFGYIPYS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-35	3	102	7	105	LOB family transfactor Ramosa2.1
5ly0_B	2e-35	3	102	7	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.25993s0537.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473848	1e-174	AB473848.1 Arabidopsis thaliana ASL15 mRNA for ASYMMETRIC LEAVES2-like 15 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010506070.1	1e-149	PREDICTED: LOB domain-containing protein 17-like
Swissprot	Q9SLB6	1e-131	LBD17_ARATH; LOB domain-containing protein 17
TrEMBL	D7LI62	1e-135	D7LI62_ARALL; Uncharacterized protein
STRING	Bostr.25993s0537.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	1e-114	LBD family protein

Link Out ? help Back to Top
Phytozome	Bostr.25993s0537.1.p

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]