PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.25993s0430.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Nin-like

Protein Properties

Length: 930aa MW: 102800 Da PI: 5.1674

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.25993s0430.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.5	2.7e-28	587	637	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl+ l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Bostr.25993s0430.1.p 587 EKNVSLSILQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 637 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.699	576	657	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-27	589	637	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.52E-23	822	918	No hit	No description
Gene3D	G3DSA:3.10.20.240	9.7E-23	831	912	No hit	No description
SMART	SM00666	7.2E-25	833	915	IPR000270	PB1 domain
PROSITE profile	PS51745	22.109	833	915	IPR000270	PB1 domain
CDD	cd06407	3.30E-38	834	914	No hit	No description
Pfam	PF00564	7.3E-18	836	914	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 930 aa Download sequence Send to blast
MENPFASREK GFGYQDIPTE QMDVLNTSFG SGVRNLISDD MLNSSSELMN FDSFAAWCNS 60 PSATDILFAQ YGLSNSQPMP FGAFTSFHAA EPKGTSLTRS FHDLESSYFS EERSSVQEMS 120 SQLHHSLDND ELSGKRRRVN NQKIGFPNVL NCTIPRSLSH SLDEKMLKAL SLFMESSGSG 180 EGILAQVWTP VKTGDQYVLS TCDQAYLLDP RLSQYREVSR KFTFATEANQ CSFPGLPGRV 240 FISGVPEWTS NVMYYKTDEY LRMKHAIDNE VRGSIAIPVL ETSGTSCCAV MEFVTSKEKP 300 NFDMEMDSVC RALQAVNLRT SAIPRPQYLS SNQRDALAEI QDVLRAVCHA HKLPLALAWI 360 PCRKDQSIRV SGPNSGENCV LCIEEAACYV NDMEMEGFVH ACLEHFLRER EGIVGKAFIS 420 NEPFFSSDVK AYDISEYPLV QHARKYGLNA AVAIKLRSTY TGEDDYILEL FLPVSMQGSL 480 EQQLLLDSLS GTMQRICRTL RTVSEVRSTK KEVTKPGFWS GEMSNFPQTT CSANFQTTSL 540 DSEYNSTGSI FSGMSSDKDN GITVSQGTLE QDMSKARTPE KKKSTTEKNV SLSILQQHFS 600 GSLKDAAKSL GVCPTTLKRI CRQHGIMRWP SRKINKVNRS LRKIQTVLDS VQGVEGGLKF 660 DSSTGEFIAV GPIIQEFDTQ KGLSSHGSDA HARRSQEDMT DDTSFELPEA KSVDNAVKLE 720 EDITMNQARP GSFMEVNASE QPWAWMAEQS SLNGSEGIKS VCNLSSLAIS DGMDPTIQCS 780 GSIVEPNQSM TSSISDSSNG SGAVIRGSSS TSVEDWNQMR THNNNSGESG STTLIVKATY 840 REDTVRFKFK PSVGCPQLYK EVGKRFKLQD GSFQLKYLDD EEEWVMLVTD SDLQECLEIL 900 YGMGKHSVKF LVRDLPPAIG SSAGSNGYL*

Sequence ? help Back to Top

Protein Sequence Length: 930 aa Download sequence Send to blast

MENPFASREK GFGYQDIPTE QMDVLNTSFG SGVRNLISDD MLNSSSELMN FDSFAAWCNS  60
PSATDILFAQ YGLSNSQPMP FGAFTSFHAA EPKGTSLTRS FHDLESSYFS EERSSVQEMS  120
SQLHHSLDND ELSGKRRRVN NQKIGFPNVL NCTIPRSLSH SLDEKMLKAL SLFMESSGSG  180
EGILAQVWTP VKTGDQYVLS TCDQAYLLDP RLSQYREVSR KFTFATEANQ CSFPGLPGRV  240
FISGVPEWTS NVMYYKTDEY LRMKHAIDNE VRGSIAIPVL ETSGTSCCAV MEFVTSKEKP  300
NFDMEMDSVC RALQAVNLRT SAIPRPQYLS SNQRDALAEI QDVLRAVCHA HKLPLALAWI  360
PCRKDQSIRV SGPNSGENCV LCIEEAACYV NDMEMEGFVH ACLEHFLRER EGIVGKAFIS  420
NEPFFSSDVK AYDISEYPLV QHARKYGLNA AVAIKLRSTY TGEDDYILEL FLPVSMQGSL  480
EQQLLLDSLS GTMQRICRTL RTVSEVRSTK KEVTKPGFWS GEMSNFPQTT CSANFQTTSL  540
DSEYNSTGSI FSGMSSDKDN GITVSQGTLE QDMSKARTPE KKKSTTEKNV SLSILQQHFS  600
GSLKDAAKSL GVCPTTLKRI CRQHGIMRWP SRKINKVNRS LRKIQTVLDS VQGVEGGLKF  660
DSSTGEFIAV GPIIQEFDTQ KGLSSHGSDA HARRSQEDMT DDTSFELPEA KSVDNAVKLE  720
EDITMNQARP GSFMEVNASE QPWAWMAEQS SLNGSEGIKS VCNLSSLAIS DGMDPTIQCS  780
GSIVEPNQSM TSSISDSSNG SGAVIRGSSS TSVEDWNQMR THNNNSGESG STTLIVKATY  840
REDTVRFKFK PSVGCPQLYK EVGKRFKLQD GSFQLKYLDD EEEWVMLVTD SDLQECLEIL  900
YGMGKHSVKF LVRDLPPAIG SSAGSNGYL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	138	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.25993s0430.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC002335	0.0	AC002335.3 Arabidopsis thaliana chromosome 2 clone T1O24 map CIC10F02, complete sequence.
GenBank	AY102562	0.0	AY102562.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds.
GenBank	AY102563	0.0	AY102563.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds.
GenBank	AY649251	0.0	AY649251.1 Arabidopsis thaliana hypothetical protein (At2g43500) gene, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023639704.1	0.0	protein NLP8 isoform X1
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	R0FUG6	0.0	R0FUG6_9BRAS; Uncharacterized protein
STRING	Bostr.25993s0430.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Bostr.25993s0430.1.p

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]