PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25993s0339.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 648aa    MW: 72364.8 Da    PI: 9.9609
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25993s0339.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.6e-124594244
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHH CS
       Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrw 44
                          ++W t+E++ll++avk++G g+W+++a ++        +  ++++c++++
  Bostr.25993s0339.1.p 45 QAWGTWEELLLACAVKRHGFGDWDSVATEVRsrsslshLLASANNCRHKY 94
                          68************************************99*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-44195IPR009057Homeodomain-like
SMARTSM007175.3E-643100IPR001005SANT/Myb domain
SuperFamilySSF466891.89E-54499IPR009057Homeodomain-like
PfamPF002491.2E-114595IPR001005SANT/Myb domain
CDDcd001672.81E-64694No hitNo description
SuperFamilySSF473703.66E-18290402IPR001487Bromodomain
SMARTSM002971.7E-22294403IPR001487Bromodomain
Gene3DG3DSA:1.20.920.105.6E-17296402IPR001487Bromodomain
CDDcd043692.27E-16308398No hitNo description
PfamPF004393.9E-12308387IPR001487Bromodomain
PROSITE profilePS5001412.802313376IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MRKEEEAVSY NMNVDDTNNN NYICTDDYID EDNDNNNNIK KSQAQAWGTW EELLLACAVK  60
RHGFGDWDSV ATEVRSRSSL SHLLASANNC RHKYGDLKRR FQEEEKTVAA GETETAEEEK  120
EERVGNNIPW LEQLRNLRVA ELRREVKRYD VSILSLQLKV KKLEEEREEK PDLEDERKRE  180
RSENDGSESE HREKAVSAAE ESDRENRSMN ESNSTATVGE DERLGGDEPS QTRDDDSGDN  240
NNPDPDPVNK DTAEEEEGSV SRGSEASHSD ELGESGTSER KWKRKRRKHG GSGEIRSGES  300
KSQPLIGLLD LIRSHPRGSL FERRLRSQEA KDYKSMVKQH LDIQTIQRKL KQGSYDSSTL  360
TFYRDLQLLF TNAIVFFPLS SVESMAAHEL RAVVSEEMRK ETGKFGPRLI NREVSAMNSG  420
KADAETSDSS LSRQKSSAPL VVCKKRSSVS TKASYSSSSF SQKEVTKEET LSEEKENIVT  480
GVRSSRRVNK VVAAAAAISN NTKKGKGKSK QKQTESKTNS SNDNTSKQET GKTVKKTVSS  540
DKKKSVADFL KRLKKNSPQK ESKDQKNKSG GSGKKDSKTK PRELRSSSVG KKKAGVENTP  600
VKRTPGRPQK KTTEAGATAT ASASGKRGRD TGSTGKDNKQ PKKRIRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279287RKWKRKRRK
2282287KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25993s0339.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1207070.0AY120707.1 Arabidopsis thaliana unknown protein (At2g44430) mRNA, complete cds.
GenBankBT0096640.0BT009664.1 Arabidopsis thaliana At2g44430 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181971.10.0DNA-binding bromodomain-containing protein
TrEMBLO648770.0O64877_ARATH; At2g44430
STRINGBostr.25993s0339.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.10.0DNA-binding bromodomain-containing protein