PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25993s0300.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Trihelix
Protein Properties Length: 393aa    MW: 42845.1 Da    PI: 9.6239
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25993s0300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix704.6e-2272163187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 
                           +W+++e+ aLi+a+r+++ +l+rg+lk+++Weev++++     +   +++++qC++k+e+l+kry+ + +++++   ++  s++++f++
  Bostr.25993s0300.1.p  72 CWSHEETIALIDAYRDKWYALNRGNLKANHWEEVAEAVgancPDVTPKKTAVQCRHKMEKLRKRYRTEIQRARSVpVARFISSWVHFKR 160
                           7***********************************9988878888899*************************977999********* PP

              trihelix  85 lea 87 
                           +ea
  Bostr.25993s0300.1.p 161 MEA 163
                           *85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.9E-2171164No hitNo description
PROSITE profilePS500906.57473133IPR017877Myb-like domain
SMARTSM005956.3E-1780169IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSDLDSPMNH DPIPDPSPVR IQSSPPLAPL PPPLSSSAPD DASAEPASVT DLKSASIPAA  60
ASKSSRRLPP PCWSHEETIA LIDAYRDKWY ALNRGNLKAN HWEEVAEAVG ANCPDVTPKK  120
TAVQCRHKME KLRKRYRTEI QRARSVPVAR FISSWVHFKR MEAMENRPET KQGNESGDED  180
NDDGNYTARY QFIKGGEGGS VARTTPRFFN RNGTAGSGGG GGGSSSSGGI RIRIPTGVSI  240
AQPGPRFPGK IDQKYTASPS SGMSSNPRPG RGLGAGGSNY SARVVRIPEG GGKRGREMMM  300
KTEEDDDNDN DPMVEIASAI KLLGDTLLRT EQTRMEMTRE IEAMRMETEM KRTKMILESQ  360
QRIVEAFAKT IADNTEEKKK KTRRVSSLAA DS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25993s0300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0036720.0AC003672.3 Arabidopsis thaliana chromosome 2 clone F16B22 map m336, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293533.10.0trihelix transcription factor ASIL2
TrEMBLR0FV430.0R0FV43_9BRAS; Uncharacterized protein
STRINGBostr.25993s0300.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89632534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-167Trihelix family protein