PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.25993s0282.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 313aa MW: 34553.8 Da PI: 8.9656 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.9e-18 | 157 | 211 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Bostr.25993s0282.1.p 157 RKKLRLSKEQALILEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTK 211 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.4 | 1.1e-39 | 157 | 246 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+eLr Bostr.25993s0282.1.p 157 RKKLRLSKEQALILEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELR- 244 69*************************************************************************************9. PP HD-ZIP_I/II 90 el 91 +l Bostr.25993s0282.1.p 245 AL 246 55 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 4.0E-36 | 1 | 122 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 1.1E-18 | 136 | 211 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.88E-18 | 146 | 214 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.2 | 153 | 213 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.1E-15 | 155 | 217 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.1E-16 | 157 | 211 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.42E-14 | 157 | 214 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 188 | 211 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.9E-26 | 213 | 256 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.6E-11 | 213 | 247 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 313 aa Download sequence Send to blast |
MGERDDGLGL SLTLGISQQK EPSLRLNLMP FTTSTSSFPH MHNQNNNCHP QKIHHNSWTH 60 LFQSSGIKRT TAERNSDAGS FLRGIDVNRA PSSVAVVNME EEAAVVSSPN STVSSLSGNK 120 RDLAAARGGD EHEAERASCS RDGESDDEDC GNGDGSRKKL RLSKEQALIL EETFKEHSTL 180 NPKQKLALAK QLNLRARQVE VWFQNRRART KLKQTEVDCE YLKRCCDNLT EENRRLQKEV 240 SELRALKLSP HLYMHMTPPT TLTMCPSCER VSSSSSATVT AAPPPPAAVV GRPSPQRATP 300 WTAISLQRRS GR* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 155 | 161 | SRKKLRL |
2 | 205 | 213 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.25993s0282.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By transition from light to far-red light. {ECO:0000269|PubMed:8106086}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB493589 | 0.0 | AB493589.1 Arabidopsis thaliana At2g44910 mRNA for hypothetical protein, partial cds, clone: RAAt2g44910. | |||
GenBank | AJ441251 | 0.0 | AJ441251.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein ATHB4 (Athb4 gene). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010506430.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-4-like | ||||
Swissprot | P92953 | 1e-179 | ATHB4_ARATH; Homeobox-leucine zipper protein ATHB-4 | ||||
TrEMBL | R0FX19 | 0.0 | R0FX19_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.25993s0282.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2577 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44910.1 | 1e-141 | homeobox-leucine zipper protein 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.25993s0282.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|