PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.25993s0268.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | GATA | ||||||||
Protein Properties | Length: 261aa MW: 28447.5 Da PI: 8.0312 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.3 | 4.5e-18 | 181 | 215 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG+++++ +l Bostr.25993s0268.1.p 181 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 215 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.6E-89 | 2 | 259 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 4.8E-15 | 175 | 225 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.227 | 179 | 211 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.66E-14 | 179 | 239 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.5E-13 | 179 | 213 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.59E-13 | 180 | 227 | No hit | No description |
Pfam | PF00320 | 7.2E-16 | 181 | 215 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 181 | 206 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MDMYGLSSPD LLRIDDLLDF SNEDIFSASS NSGGSTAATS SSSFPPPHNP NFHHHHLPNS 60 SSDHHSFLHD ICVPSDDAAH LEWLSQFVDD SFADFPANPL GGTMTSVKTE TSFPGKPRSK 120 RSRAPAPFAG TWSPMTPETE HQQQIHSFKL KKEQSGGGGG GGRHQSSSSE SGEGGGGMRR 180 CTHCASEKTP QWRTGPLGPK TLCNACGVRF KSGRLVPEYR PASSPTFVLT QHSNSHRKVM 240 ELRRQKEVMR QPPQVHHHPF * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.25993s0268.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493590 | 0.0 | AB493590.1 Arabidopsis thaliana At2g45050 mRNA for hypothetical protein, partial cds, clone: RAAt2g45050. | |||
GenBank | AK317134 | 0.0 | AK317134.1 Arabidopsis thaliana AT2G45050 mRNA, complete cds, clone: RAFL21-72-C19. | |||
GenBank | BT000921 | 0.0 | BT000921.1 Arabidopsis thaliana clone C105099 putative GATA-type zinc finger transcription factor (At2g45050) mRNA, complete cds. | |||
GenBank | Y13649 | 0.0 | Y13649.1 Arabidopsis thaliana mRNA for GATA transcription factor 2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006397685.1 | 1e-142 | GATA transcription factor 2 | ||||
Swissprot | O49741 | 1e-138 | GATA2_ARATH; GATA transcription factor 2 | ||||
TrEMBL | V4LH94 | 1e-141 | V4LH94_EUTSA; GATA transcription factor | ||||
STRING | Bostr.25993s0268.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3203 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45050.1 | 1e-114 | GATA transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.25993s0268.1.p |
Publications ? help Back to Top | |||
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