PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25993s0258.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 635aa    MW: 69761.4 Da    PI: 5.4283
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25993s0258.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS312.31.1e-952656333374
                  GRAS   3 elLlecAeavss....gdle.....laqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                           e+L+++Ae + +    +  +     laq +Larl+++ +s++++p+qR+a++++eAL   +++      ++ pp +t ++n + ++aa+
  Bostr.25993s0258.1.p 265 EQLFNAAELIGTignnN--NgdhtvLAQGILARLNHHlNSNHKSPLQRAASHIAEALLLLIHN------DSSPPLTT-PENLILRIAAY 344
                           67777777776554221..1333369*********99899999*******************9......55555555.589******** PP

                  GRAS  82 klfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLas.....RpegppslRiTgvgspesg..skeeleet 161
                           + fse+sP+l+f ++taNq Ile+ +++  +++HiiDfd+++G+QW +L+q+Las     R++ + sl+iT++++p s+  ++ el+ t
  Bostr.25993s0258.1.p 345 RSFSETSPFLQFVNFTANQSILESCNESgfDQIHIIDFDVGYGGQWSSLMQELASggggrRRNRASSLKITVFAPPPSTvsDEFELRFT 433
                           *************************99988************************744443557899*********9988899******* PP

                  GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248
                           +e+L+ fA e+++pfe+++l  + l +  ++ L++++  +Ea+aVnl ++             + + +L+++k++sP+vvv++++ +d+
  Bostr.25993s0258.1.p 434 EENLKTFAVEVKIPFEIELLSIELLLNPAYWPLSLRSseKEAIAVNLPINSVVSG--------YLPLILRFLKQISPNVVVCSDRGCDR 514
                           ********************88888888999998887779********9655554........5677********************** PP

                  GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                           n+++F + +++al+y+++l++sl+a+   +++++++vEr++++++i++++++++++     e+   Wr+ ++++GF+p++ls++a++qa
  Bostr.25993s0258.1.p 515 NDAPFPNSVIHALQYHTTLLESLDAN---QNQDDSSVERFWVQPSIEKLLMKRHRW----IERSPPWRSLFTQCGFSPASLSQTAETQA 596
                           **************************...89*************************....89999************************ PP

                  GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                           ++ll++  ++g++ve+++ slv++W++++Lv+vSaW+
  Bostr.25993s0258.1.p 597 ECLLQRNTVRGFHVEKRQSSLVMCWQRKELVTVSAWK 633
                           ************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.287244613IPR005202Transcription factor GRAS
PfamPF035143.8E-93265633IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MPLSFERFQG EGVFGLTSSS FYPDSQKIWF NQDKTGIREE KQEEELGYVV GCVLPEPTSV  60
LDALRSPSPL ASYSSTTTTL SSSHGGGTTV TATTVTAGDD KCSQMGLDDL DGVLSASSPG  120
QEQSILRLIM DPGSGFGVFD PGFGFGSCSG HVPVPVSENS NPLCSFPFQE ITNPAEALIN  180
PSNHSLFSNP PLSPPAKRFN SGSHLQPVFP FSDPDPGHDP VRRQHQYQFQ FHHLQQQIPS  240
SSSSVAMVPV PSPVTAGDDQ SVIIEQLFNA AELIGTIGNN NNGDHTVLAQ GILARLNHHL  300
NSNHKSPLQR AASHIAEALL LLIHNDSSPP LTTPENLILR IAAYRSFSET SPFLQFVNFT  360
ANQSILESCN ESGFDQIHII DFDVGYGGQW SSLMQELASG GGGRRRNRAS SLKITVFAPP  420
PSTVSDEFEL RFTEENLKTF AVEVKIPFEI ELLSIELLLN PAYWPLSLRS SEKEAIAVNL  480
PINSVVSGYL PLILRFLKQI SPNVVVCSDR GCDRNDAPFP NSVIHALQYH TTLLESLDAN  540
QNQDDSSVER FWVQPSIEKL LMKRHRWIER SPPWRSLFTQ CGFSPASLSQ TAETQAECLL  600
QRNTVRGFHV EKRQSSLVMC WQRKELVTVS AWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2830263334375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25993s0258.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546050.0AC254605.1 Capsella rubella clone CAP23-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_182041.10.0GRAS family transcription factor
SwissprotQ7XJM80.0SCL27_ARATH; Scarecrow-like protein 27
TrEMBLA0A384KUR00.0A0A384KUR0_ARATH; LOM1
TrEMBLB7ZWR80.0B7ZWR8_ARATH; At2g45160
STRINGBostr.25993s0258.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134171828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.10.0GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  3. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]