PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.25993s0227.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

GRF

Protein Properties

Length: 435aa MW: 48770.7 Da PI: 8.8382

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.25993s0227.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.3	1.3e-23	86	130	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++ep rCrRtDGKkWRCs+ vl +k+CErH+hrgr+rsrk +e+ Bostr.25993s0227.1.p 86 EPEPTRCRRTDGKKWRCSNMVLLFEKYCERHMHRGRKRSRKLVES 130 69***************************************9986 PP
2	WRC	69.9	3.2e-22	311	350	1	40
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 d+epgrCrRtDGKkWRCs+++l+g+k+C++H+hrg +++ Bostr.25993s0227.1.p 311 DNEPGRCRRTDGKKWRCSKDALPGQKYCDKHMHRGIKKKH 350 68*********************************88764 PP
3	QLQ	39.7	1.5e-14	22	56	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 + aaQl+++ +Q+l+y+y+ a++ vP++L+++i++ Bostr.25993s0227.1.p 22 MKAAQLMEFQMQALVYRYIEAGLRVPHHLVVPIWN 56 789*******************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.5E-6	20	56	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	15.796	21	56	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.3E-8	23	55	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.005	86	130	IPR014977	WRC domain
Pfam	PF08879	1.1E-19	87	129	IPR014977	WRC domain
PROSITE profile	PS51667	22.601	311	355	IPR014977	WRC domain
Pfam	PF08879	1.5E-18	313	350	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MQSPKMEQDE EEERRRKKWP LMKAAQLMEF QMQALVYRYI EAGLRVPHHL VVPIWNSLAL 60 SSSSNYIYHS SSLLSNKGLN NIDTVEPEPT RCRRTDGKKW RCSNMVLLFE KYCERHMHRG 120 RKRSRKLVES SYEVASSSAT LTKHDNTYGL DRNNYSESVL HGTMSGSSNA QVVTIASLPS 180 ARACGNVIHP SLVISESTNK SVSHSDRSRR NMEMSYDDFI NKKESSMCVS VVRLQGDEGL 240 PSVQKFFPEV SESSLQAAQF SGNRKNDIIA RSREWKNMNV VNGGLFHSIN YSPDTVLQDS 300 GGFRLQRAET DNEPGRCRRT DGKKWRCSKD ALPGQKYCDK HMHRGIKKKH PVDTTNSHEN 360 SGFSPLTVKT AARSVSCIDG DDQKLSVSVM GNPLPRVSDE KSTSSCSTDT TITDTALRGE 420 KDNEEELSLC SSGV*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MQSPKMEQDE EEERRRKKWP LMKAAQLMEF QMQALVYRYI EAGLRVPHHL VVPIWNSLAL  60
SSSSNYIYHS SSLLSNKGLN NIDTVEPEPT RCRRTDGKKW RCSNMVLLFE KYCERHMHRG  120
RKRSRKLVES SYEVASSSAT LTKHDNTYGL DRNNYSESVL HGTMSGSSNA QVVTIASLPS  180
ARACGNVIHP SLVISESTNK SVSHSDRSRR NMEMSYDDFI NKKESSMCVS VVRLQGDEGL  240
PSVQKFFPEV SESSLQAAQF SGNRKNDIIA RSREWKNMNV VNGGLFHSIN YSPDTVLQDS  300
GGFRLQRAET DNEPGRCRRT DGKKWRCSKD ALPGQKYCDK HMHRGIKKKH PVDTTNSHEN  360
SGFSPLTVKT AARSVSCIDG DDQKLSVSVM GNPLPRVSDE KSTSSCSTDT TITDTALRGE  420
KDNEEELSLC SSGV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	126	GRKRSRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269\|PubMed:21036927}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.25993s0227.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY074647	0.0	AY074647.1 Arabidopsis thaliana At2g45480/F4L23.1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020885588.1	0.0	growth-regulating factor 9 isoform X3
Swissprot	Q8S9M3	0.0	GRF9_ARATH; Growth-regulating factor 9
TrEMBL	D7LCJ7	0.0	D7LCJ7_ARALL; At2g45480/F4L23.1
STRING	Bostr.25993s0227.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13760	20	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45480.1	0.0	growth-regulating factor 9

Link Out ? help Back to Top
Phytozome	Bostr.25993s0227.1.p

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]