PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.25993s0196.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 781aa MW: 85559 Da PI: 6.6925 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.9 | 5.6e-21 | 96 | 151 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r +L+++l+L+ rqVk+WFqNrR+++k Bostr.25993s0196.1.p 96 KKRYHRHTPQQIQELESVFKECPHPDEKQRLDLSRRLNLDSRQVKFWFQNRRTQMK 151 688999***********************************************999 PP | |||||||
2 | START | 182 | 3.2e-57 | 302 | 528 | 1 | 205 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla... 77 ela++a++elvk+a+ +ep+W +ss + +n++e+ ++f++ + + +ea++++g+v+ ++ lve+l+d+ +W e+++ Bostr.25993s0196.1.p 302 ELALSAMDELVKMAQTSEPLWLESSkgkrKLLNREEYEKIFTPCLGpkpdeFVSEASKEVGMVIINSLALVETLMDSE-RWAEMFPcmi 389 57899********************99999999********88666999999**************************.********** PP .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEE CS START 78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgilie 155 + +t e issg gal+lm+aelq+lsplvp R ++f+R+++q+ +g+w++vdvSvd ++++ + + +++lpSg+l++ Bostr.25993s0196.1.p 390 aRNSTSEIISSGmggtrnGALHLMQAELQLLSPLVPvRQVTFLRFCKQHAEGVWAVVDVSVDRNSDRGGsasAQTSLSCRRLPSGCLVQ 478 *****************************************************************9987777778999*********** PP EECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 156 pksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 +++ng+skvtw++h+++++ ++h l+r+lv+sgla+g k+w ++lq qc+ Bostr.25993s0196.1.p 479 DMPNGYSKVTWIDHTEYDDTHIHHLYRPLVSSGLAFGSKRWISALQGQCK 528 *************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.07E-20 | 81 | 153 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-21 | 84 | 153 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.637 | 93 | 153 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-19 | 94 | 157 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.98E-18 | 96 | 153 | No hit | No description |
Pfam | PF00046 | 1.3E-18 | 96 | 151 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 128 | 151 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 41.339 | 293 | 532 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.51E-27 | 296 | 529 | No hit | No description |
CDD | cd08875 | 9.92E-113 | 297 | 527 | No hit | No description |
Pfam | PF01852 | 1.0E-49 | 302 | 528 | IPR002913 | START domain |
SMART | SM00234 | 1.2E-44 | 302 | 529 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.94E-21 | 557 | 772 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 781 aa Download sequence Send to blast |
MDFSGFLHHD DDNSSGGGNH FSSSAAMSGG LAKSIFSSPR LSLGLQQTNG EATRTGESFE 60 VSISRRSPES RSGSDNAEAL SGDDDLDASD RPLKKKKRYH RHTPQQIQEL ESVFKECPHP 120 DEKQRLDLSR RLNLDSRQVK FWFQNRRTQM KTQIERHENS LLRQENDKLR AENMSAREAI 180 RNPMCGHCGG SAVLGEISLE EHHLRTENSR LKDELDRICA LAGKFLNRSD DEATGSHQLP 240 NSALKLGVGT NNGYGGGGGG GGFTLVPPGF EILSPFFSGL AAPVNRTTDV ATGLDQKSLY 300 LELALSAMDE LVKMAQTSEP LWLESSKGKR KLLNREEYEK IFTPCLGPKP DEFVSEASKE 360 VGMVIINSLA LVETLMDSER WAEMFPCMIA RNSTSEIISS GMGGTRNGAL HLMQAELQLL 420 SPLVPVRQVT FLRFCKQHAE GVWAVVDVSV DRNSDRGGSA SAQTSLSCRR LPSGCLVQDM 480 PNGYSKVTWI DHTEYDDTHI HHLYRPLVSS GLAFGSKRWI SALQGQCKSL TILMSSTIPN 540 RDKPTPISSL GKKSMLKLAQ RMTQKFCRGV CASSSQKWSK LEIGNIDEDV RIMTRKNVDD 600 SGEPPGILLS AATSVWVPVP PRRLFDFLRD ELLRSEWDIL SNGGPMQEIA TIFKGQDQSN 660 SVSLLRSTAM NAIQSSMLIL QETSIDASGA IVVYAPVDIP AMHSVMNGAD SAYVALLPSG 720 FAILPDGQGM EENGSLLTVA FQILVNSLPT AKLNVESIET VNNLISCTVQ KIRAALRCDK 780 * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.25993s0196.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023640300.1 | 0.0 | homeobox-leucine zipper protein HDG1 isoform X1 | ||||
Swissprot | Q9M2E8 | 0.0 | HDG1_ARATH; Homeobox-leucine zipper protein HDG1 | ||||
TrEMBL | R0FVJ9 | 0.0 | R0FVJ9_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.25993s0196.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1128 | 27 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G61150.1 | 0.0 | homeodomain GLABROUS 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.25993s0196.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|