PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25993s0141.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bZIP
Protein Properties Length: 265aa    MW: 28677.8 Da    PI: 9.8063
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25993s0141.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1322.8e-10232256125
                           XXXXCHHHCHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKk 25 
                           e+elkrerrkq+NRe+ArrsR+RK+
  Bostr.25993s0141.2.p 232 ERELKRERRKQSNRESARRSRLRKQ 256
                           89**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.3E-31194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.9E-14127231No hitNo description
Gene3DG3DSA:1.20.5.1709.3E-8228260No hitNo description
PfamPF001701.5E-7232256IPR004827Basic-leucine zipper domain
CDDcd147022.67E-11237256No hitNo description
PROSITE patternPS000360239254IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGKSEEPKPT KSDNKPSSPP DQTNVHVYPD WAAMQAYYGP RVAMPPYYNS AMAASGHLPP  60
PYMWNPQHMM SPYGAPYGAV YPHGGGVYAH PGIPMGSQPQ GQKAPPITTP GTHLSIDTPT  120
KSSGNTDNGL MKKLKEFDGL AMSLGNGNSE NDADEHKRSR SSSETDGSTD RSDGNTTGAD  180
EPELKRSREG TPTKDGKQLV QSSSLRSVSP SSGDTGVNVI QGAGAIVSPG NERELKRERR  240
KQSNRESARR SRLRKQVWLM KETVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248254RRSRLRK
2248255RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25993s0141.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3703070.0AF370307.1 Arabidopsis thaliana putative G-box binding bZIP transcription factor (At2g46270) mRNA, complete cds.
GenBankAY0630930.0AY063093.1 Arabidopsis thaliana putative G-box binding bZIP transcription factor (At2g46270) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639623.11e-164G-box-binding factor 3 isoform X2
SwissprotP427761e-154GBF3_ARATH; G-box-binding factor 3
TrEMBLR0HPV11e-162R0HPV1_9BRAS; Uncharacterized protein
STRINGBostr.25993s0141.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.21e-157G-box binding factor 3
Publications ? help Back to Top
  1. Obayashi T, et al.
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res., 2007. 35(Database issue): p. D863-9
    [PMID:17130150]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  3. Ramegowda V, et al.
    GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 9148
    [PMID:28831141]