PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.25993s0011.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 365aa MW: 40448 Da PI: 5.1921 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEd++l ++++ G g+W++ ++ g++R++k+c++rw +yl Bostr.25993s0011.1.p 14 RGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYL 61 8*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.9 | 9.8e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE+el v+++ lG++ W++Ia++++ gRt++++k++w+++l Bostr.25993s0011.1.p 67 RGNISPEEEELVVKLHSTLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.114 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.46E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.32E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.283 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.31E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009813 | Biological Process | flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 365 aa Download sequence Send to blast |
MGRAPCCEKV GIKRGRWTAE EDQILSNYIQ SNGEGSWRSL PKNAGLKRCG KSCRLRWINY 60 LRSDLKRGNI SPEEEELVVK LHSTLGNRWS LIASHLPGRT DNEIKNYWNS HLSRKLHNFI 120 RKPSISQDVS AVIMNASSLP PPPQAKRRLG RTSRSAMKPK THRTKTRKTK KTSAPLEPNA 180 DVAVAEGALM VELSGAEAEL GPRDYFGDYC NKNLVSINGD NGVLSFDDAI IDLLLDESDP 240 GHIYTSCGGD AELNTIRDSD GARGFSESSN EGKLDGLQSC PSVESFLNYE HQVNDALMDE 300 FIDWDCVWQE GSNNLCHEKE GPDSMVSWLL DGDDDATIGK SNRDNFGEPL DHDDENALVA 360 WLLS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 5e-23 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 5e-23 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis mainly in the root (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:15923334, ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00627 | PBM | Transfer from PK06182.1 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.25993s0011.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By nitrogen deficiency, sucrose and UV LIGHT (PubMed:17053893, PubMed:9839469). Triggered by HY5 in response to light and UV-B (PubMed:19895401). {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY060588 | 0.0 | AY060588.1 Arabidopsis thaliana At2g47460/T30B22.24 mRNA, complete cds. | |||
GenBank | AY142067 | 0.0 | AY142067.1 Arabidopsis thaliana At2g47460/T30B22.24 mRNA, complete cds. | |||
GenBank | AY519580 | 0.0 | AY519580.1 Arabidopsis thaliana MYB transcription factor (At2g47460) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020882893.1 | 0.0 | transcription factor MYB12 | ||||
Swissprot | O22264 | 0.0 | MYB12_ARATH; Transcription factor MYB12 | ||||
TrEMBL | D7LGN2 | 0.0 | D7LGN2_ARALL; Uncharacterized protein | ||||
STRING | Bostr.25993s0011.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47460.1 | 0.0 | myb domain protein 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.25993s0011.1.p |