PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.2570s0301.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 350aa MW: 39870.7 Da PI: 7.7634 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.7 | 9.6e-53 | 10 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+ +yL+kkv++++++l ++i++vdiyk++PwdLp+k+ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk Bostr.2570s0301.1.p 10 LPPGFRFHPTDEELILHYLRKKVSSSPVPL-SIIADVDIYKSDPWDLPAKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDK 98 79****************************.89***************988899************************************ PP NAM 91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ +e++g+kk Lvfy+g+ pkg+kt+W+mheyrl Bostr.2570s0301.1.p 99 LIAVAngegFHENIGIKKALVFYRGKPPKGVKTNWIMHEYRL 140 ***9855444455***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-62 | 7 | 184 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.125 | 10 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-28 | 11 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MISKDPRSSL PPGFRFHPTD EELILHYLRK KVSSSPVPLS IIADVDIYKS DPWDLPAKAP 60 FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKLI AVANGEGFHE NIGIKKALVF 120 YRGKPPKGVK TNWIMHEYRL AESLSPKRIN CSSSEVNNLG HMNLKSKEYS MRLDDWVLCR 180 IYKKSHASLS SPDVALVSSN QEHEENDNEP FVDRGTFLPN LQNDQPLKRQ KSSFSNLLDA 240 TDLTFLKNFL NETPENRTES DFAFMIGNFS NPDIYGNHYL DQKLPKLSSP TSETSGIGNK 300 RERLNFAEET MNTYSYNTSI DQLDHSMIQQ SSFLNQELLM SSHLQYQGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-70 | 9 | 188 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-70 | 9 | 188 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-70 | 9 | 188 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-70 | 9 | 188 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-70 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
3swm_B | 3e-70 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
3swm_C | 3e-70 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
3swm_D | 3e-70 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
3swp_A | 3e-70 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
3swp_B | 3e-70 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
3swp_C | 3e-70 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
3swp_D | 3e-70 | 9 | 188 | 19 | 172 | NAC domain-containing protein 19 |
4dul_A | 3e-70 | 9 | 188 | 16 | 169 | NAC domain-containing protein 19 |
4dul_B | 3e-70 | 9 | 188 | 16 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00333 | DAP | Transfer from AT3G04070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.2570s0301.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227417 | 0.0 | AK227417.1 Arabidopsis thaliana mRNA for NAM-like protein, complete cds, clone: RAFL14-07-D22. | |||
GenBank | BT005985 | 0.0 | BT005985.1 Arabidopsis thaliana At3g04070 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_187057.2 | 0.0 | NAC domain containing protein 47 | ||||
Swissprot | Q84TD6 | 0.0 | NAC47_ARATH; NAC transcription factor 47 | ||||
TrEMBL | A0A178VJ79 | 0.0 | A0A178VJ79_ARATH; NAC047 | ||||
STRING | Bostr.2570s0301.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7723 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 0.0 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.2570s0301.1.p |
Publications ? help Back to Top | |||
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