PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.2570s0145.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

MYB_related

Protein Properties

Length: 1056aa MW: 118078 Da PI: 9.7762

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.2570s0145.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.5	1.3e-07	44	76	3	36
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36 WT E e+++da +++G + Wk++a+ + + R+ Bostr.2570s0145.1.p 44 QWTRVELERFYDAYRKHGQE-WKKVAAAIRNSRS 76 6*****************.***99886666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.61E-6	43	89	IPR009057	Homeodomain-like
SMART	SM01135	3.5E-59	638	739	IPR033471	DIRP domain
Pfam	PF06584	7.7E-32	638	738	IPR033471	DIRP domain
SMART	SM00333	0.0011	725	782	IPR002999	Tudor domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005654	Cellular Component	nucleoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1056 aa Download sequence Send to blast
MAPVRKSRSV NKRFTNETSP GKDAGNSRKN KQRKKKLSDK LGPQWTRVEL ERFYDAYRKH 60 GQEWKKVAAA IRNSRSVDMV EALFHMNRAY LSLPEGTASV AGLIAMMTDH YSVMEGSGSE 120 GEGHDASEVP RKQQKRKRAK PQLSDSREEV DIQHSVASTD GCLSFLKQAR ANGTQRRATG 180 KRTPRVPVQT SYMRDDREGS TPPNKRARKQ FDANDDVAHF LALALTDASR RGGSSKVSES 240 PNRRTELNDS SPIKSWGNMS RTRKAQSKHS DSSIFEEWAA SSQERKLESD KDTALLMDMD 300 GVSEMEAPRK GKRFYKKKVK VEEAEGNDSD DNGEACSATE GLRIKSQRRK AAIEASRGKY 360 SPRSAKKRDS KLTSGDEFDA LQALAELSAS MLPATLMESE SSVRLKEERT EYDMDEKSST 420 PEATSSSSHG EKANAEPDDS LLHAISSVEN ANKRKPKPSR QASTDCDAVP TGKLQPQTIG 480 CLRRKRKPKV LGDEAPADFS QNKSINKKEL PQDENDMKSL VRTKRAGQGP AQSKQLKTVK 540 ALEESTTTSD KNRPVMDVVA STKQVSDSGP ASVSQKPPSK RKKSLKKSLQ ERAKSSETIH 600 KASRSSRSLS EQELLLKDKL STSLSYPLAR RRCIFEWFYS AIDHPWFAKM EFVDYLNHVG 660 LGHIPRLTRL EWSVVKSSLG RPRRFSEKFL QEERDKLKQY RESVRKHYTE LRTGAREGLP 720 TDLARPLSVG NRVIAIHPKT REIHDGQILT VDHNKCNVLF DDLGVELVMD IDCMPSNPLE 780 YMPEGLRRQN DKCFSMKKEA QLSRNSNLGV SVIFPPCGLE NVSFSMNPSL NQGDMIAPIH 840 HGKASTNTSS PQQTNHSYIT TYSKAREAEI QRALALQHAL DEKEMEPEML EIVKGSKTRA 900 QLMVDAAIKA ASSVKEGEDV NKMIQEALDL IGRDQPLHGF RFKHHEHVNG SIEHHHNPSP 960 SDASEPMANN DFNSQDGSEK NEAQMPSELI TSCVATWLMI QMCTERQYPP ADVAQLIDAA 1020 VTSLQPRCPQ NLPIYREIQT CMGRIKTQIL ALVPT*

Sequence ? help Back to Top

Protein Sequence Length: 1056 aa Download sequence Send to blast

MAPVRKSRSV NKRFTNETSP GKDAGNSRKN KQRKKKLSDK LGPQWTRVEL ERFYDAYRKH  60
GQEWKKVAAA IRNSRSVDMV EALFHMNRAY LSLPEGTASV AGLIAMMTDH YSVMEGSGSE  120
GEGHDASEVP RKQQKRKRAK PQLSDSREEV DIQHSVASTD GCLSFLKQAR ANGTQRRATG  180
KRTPRVPVQT SYMRDDREGS TPPNKRARKQ FDANDDVAHF LALALTDASR RGGSSKVSES  240
PNRRTELNDS SPIKSWGNMS RTRKAQSKHS DSSIFEEWAA SSQERKLESD KDTALLMDMD  300
GVSEMEAPRK GKRFYKKKVK VEEAEGNDSD DNGEACSATE GLRIKSQRRK AAIEASRGKY  360
SPRSAKKRDS KLTSGDEFDA LQALAELSAS MLPATLMESE SSVRLKEERT EYDMDEKSST  420
PEATSSSSHG EKANAEPDDS LLHAISSVEN ANKRKPKPSR QASTDCDAVP TGKLQPQTIG  480
CLRRKRKPKV LGDEAPADFS QNKSINKKEL PQDENDMKSL VRTKRAGQGP AQSKQLKTVK  540
ALEESTTTSD KNRPVMDVVA STKQVSDSGP ASVSQKPPSK RKKSLKKSLQ ERAKSSETIH  600
KASRSSRSLS EQELLLKDKL STSLSYPLAR RRCIFEWFYS AIDHPWFAKM EFVDYLNHVG  660
LGHIPRLTRL EWSVVKSSLG RPRRFSEKFL QEERDKLKQY RESVRKHYTE LRTGAREGLP  720
TDLARPLSVG NRVIAIHPKT REIHDGQILT VDHNKCNVLF DDLGVELVMD IDCMPSNPLE  780
YMPEGLRRQN DKCFSMKKEA QLSRNSNLGV SVIFPPCGLE NVSFSMNPSL NQGDMIAPIH  840
HGKASTNTSS PQQTNHSYIT TYSKAREAEI QRALALQHAL DEKEMEPEML EIVKGSKTRA  900
QLMVDAAIKA ASSVKEGEDV NKMIQEALDL IGRDQPLHGF RFKHHEHVNG SIEHHHNPSP  960
SDASEPMANN DFNSQDGSEK NEAQMPSELI TSCVATWLMI QMCTERQYPP ADVAQLIDAA  1020
VTSLQPRCPQ NLPIYREIQT CMGRIKTQIL ALVPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	140	QKRKRAKP
2	481	487	LRRKRKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.2570s0145.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ583496	0.0	AJ583496.1 Arabidopsis thaliana mRNA for Arabidopsis always early 2 protein (Ataly2 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020887239.1	0.0	protein ALWAYS EARLY 2 isoform X4
Swissprot	Q6A333	0.0	ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBL	R0HJB2	0.0	R0HJB2_9BRAS; Uncharacterized protein
STRING	Bostr.2570s0145.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-102	DNA binding

Link Out ? help Back to Top
Phytozome	Bostr.2570s0145.1.p

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]